File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9d/2be486783699a5df239f13ed2e6ab7/.command.err
Size
63.3 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_2;chr1_68991-70108.bed)
Attempt

Content

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[2026-05-27T11:33:32.101855Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-27T11:33:32.104647Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-27T11:33:32.104656Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-27T11:33:32.104660Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-27T11:33:32.104664Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXRqqAz6'
[2026-05-27T11:33:32.104668Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-27T11:33:32.104673Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-27T11:33:32.104677Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-27T11:33:32.104681Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-05-27T11:33:32.104684Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-27T11:33:32.104688Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-27T11:33:32.104692Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-27T11:33:32.104699Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-27T11:33:32.104703Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-27T11:33:32.105367Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-27T11:33:32.105524Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-27T11:33:32.111201Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-27T11:33:32.111967Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-27T11:33:32.112170Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-27T11:33:32.112420Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-27T11:33:32.112670Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.112998Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.113119Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.113191Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.113308Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.113375Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.113527Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.113597Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.113715Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.114043Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.114229Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.114266Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.114420Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.114956Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.115272Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.116863Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.117083Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.117522Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-27T11:33:32.117797Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.117895Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.118239Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.118502Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.118617Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.118685Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.118797Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.118858Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.118975Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.119041Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.119153Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.119221Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.119331Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.119423Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.119705Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.119985Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.120102Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.120170Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.120281Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.120345Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.120455Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.120523Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.120633Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.120696Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.120831Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.120895Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.121890Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.122163Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.122590Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.122715Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.122834Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.122902Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.123011Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.123075Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.123186Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.123249Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.123361Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.123423Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.123536Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.123700Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.124187Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.124255Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.124369Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.124430Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.124540Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.124603Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.124710Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.124810Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.124942Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.125004Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.140964Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.141158Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.141272Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.142446Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.142585Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.142710Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.144338Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.144700Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.144883Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.145131Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.145686Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-27T11:33:32.145927Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.146436Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.147140Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.148030Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.149440Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.151723Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0014] Task initiated on local node
[2026-05-27T11:33:32.152335Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.153920Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.155072Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.158875Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-05-27T11:33:32.164221Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0004] Task initiated on local node
[2026-05-27T11:33:32.164806Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-05-27T11:33:32.168456Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0000] Task initiated on local node
[2026-05-27T11:33:32.171500Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-05-27T11:33:32.174464Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0011] Task initiated on local node
[2026-05-27T11:33:32.175738Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0009] Task initiated on local node
[2026-05-27T11:33:32.287429Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.287502Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.288264Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.288604Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.292319Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0002] Task initiated on local node
[2026-05-27T11:33:32.292994Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0019] Task initiated on local node
[2026-05-27T11:33:33.105281Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.106561Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.110060Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0005] Task initiated on local node
[2026-05-27T11:33:33.472522Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.473464Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.476980Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-05-27T11:33:33.538076Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.539076Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.542515Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0017] Task initiated on local node
[2026-05-27T11:33:34.406473Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.407405Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.410763Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-05-27T11:33:34.672919Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.673981Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.676861Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0006] Task initiated on local node
[2026-05-27T11:33:34.838781Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.839702Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.843138Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0009] Task initiated on local node
[2026-05-27T11:33:34.904317Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.904436Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.905335Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.905777Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.909493Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_000_chr1_0000] Task initiated on local node
[2026-05-27T11:33:34.910322Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-05-27T11:33:34.970620Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.971451Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.974951Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-05-27T11:33:35.035913Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.036019Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.036847Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.037382Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.040717Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-05-27T11:33:35.041445Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0000] Task initiated on local node
[2026-05-27T11:33:35.101983Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.102131Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.103053Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.103372Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.107052Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0004] Task initiated on local node
[2026-05-27T11:33:35.108101Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0016] Task initiated on local node
[2026-05-27T11:33:35.136157Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.137085Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.140158Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0011] Task initiated on local node
[2026-05-27T11:33:35.201472Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.202365Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.205841Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0001] Task initiated on local node
[2026-05-27T11:33:35.568908Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.569777Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.573518Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-05-27T11:33:35.602521Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.603377Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.607109Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0005] Task initiated on local node
[2026-05-27T11:33:35.668244Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.669513Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.672855Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0014] Task initiated on local node
[2026-05-27T11:33:35.734361Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.735845Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.739530Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-05-27T11:33:35.800690Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.801632Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.805327Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0013] Task initiated on local node
[2026-05-27T11:33:35.916671Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.917785Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.920816Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0006] Task initiated on local node
[2026-05-27T11:33:35.982506Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.983871Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.987465Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0010] Task initiated on local node
[2026-05-27T11:33:35.988268Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.989080Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.991778Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-05-27T11:33:36.053453Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.054800Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.058688Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-05-27T11:33:36.370237Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.371475Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.374817Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0017] Task initiated on local node
[2026-05-27T11:33:36.436191Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.437576Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.440833Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0007] Task initiated on local node
[2026-05-27T11:33:36.441742Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.442594Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.446076Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0016] Task initiated on local node
[2026-05-27T11:33:36.506871Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.507020Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.507943Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.508348Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.512121Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-05-27T11:33:36.513212Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0012] Task initiated on local node
[2026-05-27T11:33:36.573209Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.573332Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.574238Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.574720Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.578360Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-05-27T11:33:36.579648Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0008] Task initiated on local node
[2026-05-27T11:33:36.639370Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.640165Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.643421Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-05-27T11:33:37.557577Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.558282Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.561797Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0020] Task initiated on local node
[2026-05-27T11:33:37.874133Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.874258Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.875002Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.875413Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.878808Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0019] Task initiated on local node
[2026-05-27T11:33:37.880474Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-05-27T11:33:37.940294Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.941070Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.944344Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-05-27T11:33:37.944918Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.945405Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.948045Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-05-27T11:33:38.009641Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.010605Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.010992Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.012081Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.015266Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-05-27T11:33:38.016366Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-05-27T11:33:38.076912Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.077040Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.077708Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.078400Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.081337Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-05-27T11:33:38.082477Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0015] Task initiated on local node
[2026-05-27T11:33:38.144017Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.144833Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.148437Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0010] Task initiated on local node
[2026-05-27T11:33:38.209581Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.210302Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.213795Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0018] Task initiated on local node
[2026-05-27T11:33:38.275058Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.275802Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.279091Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0001] Task initiated on local node
[2026-05-27T11:33:38.340342Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.341024Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.344623Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0008] Task initiated on local node
[2026-05-27T11:33:38.405901Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.406658Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.410085Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0003] Task initiated on local node
[2026-05-27T11:33:38.622321Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.623003Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.626215Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0002] Task initiated on local node
[2026-05-27T11:33:38.655163Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.655268Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.655819Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.656180Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.659488Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0007] Task initiated on local node
[2026-05-27T11:33:38.660597Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-05-27T11:33:38.721298Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.721409Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.721938Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.722209Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.725617Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0013] Task initiated on local node
[2026-05-27T11:33:38.726509Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.726909Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0012] Task initiated on local node
[2026-05-27T11:33:38.727137Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.729447Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-05-27T11:33:38.759029Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.759110Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.759139Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:39.074211Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:39.074721Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:39.078067Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-05-27T11:33:39.138964Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:39.604440Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:39.605010Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-05-27T11:33:39.608023Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0020] Task initiated on local node
[2026-05-27T11:33:39.669435Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:39.733776Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:39.734251Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-05-27T11:33:39.736940Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0018] Task initiated on local node
[2026-05-27T11:33:39.798506Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:39.798596Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:39.799038Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-05-27T11:33:39.801417Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0015] Task initiated on local node
[2026-05-27T11:33:39.830935Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.847160Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.847604Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.850083Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0003] Task initiated on local node
[2026-05-27T11:33:40.879419Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.879660Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.879781Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.880040Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.880224Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.884327Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-27T11:33:40.884721Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-27T11:33:40.885283Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-27T11:33:40.912547Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.912612Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.912635Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.912824Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.914206Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.914948Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-27T11:33:40.916801Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-27T11:33:40.946419Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.946480Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.946637Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.948733Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-27T11:33:40.978443Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:42.746778Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-27T11:33:50.993289Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-27T11:33:50.993289Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] 
[2026-05-27T11:33:50.993289Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-27T11:33:50.993350Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] 
[2026-05-27T11:33:50.993358Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-27T11:33:50.993364Z] [nf-9d2be486783699a5df239f13ed2e6ab7-c3c4c-lzqvz] [654_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec