[2026-05-27T11:33:28.763400Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-27T11:33:28.764323Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-27T11:33:28.764335Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-27T11:33:28.764339Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-27T11:33:28.764344Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXICrCzX'
[2026-05-27T11:33:28.764348Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-27T11:33:28.764352Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-27T11:33:28.764356Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-27T11:33:28.764360Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-05-27T11:33:28.764363Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-27T11:33:28.764370Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-27T11:33:28.764374Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-27T11:33:28.764379Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-27T11:33:28.764382Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-27T11:33:28.764940Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-27T11:33:28.765063Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-27T11:33:28.770806Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-27T11:33:28.771503Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-27T11:33:28.771698Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-27T11:33:28.771889Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-27T11:33:28.772155Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.772512Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.772604Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.772674Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.772793Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.772861Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.772978Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.773048Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.773165Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.773229Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.773723Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.773855Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.774010Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.774754Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.774940Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.775089Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.775168Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.775318Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.775400Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.775646Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.775844Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.776121Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.778114Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.778590Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-27T11:33:28.779027Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.779350Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.779518Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.779595Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.779715Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.779786Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.779901Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.779968Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.780081Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.780169Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.780881Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.780976Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.781092Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.781157Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.781267Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.781335Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.781448Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.781511Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.781619Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.781682Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.782469Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.782856Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.782973Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.783042Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.783226Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.783293Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.783399Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.783461Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.783609Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.783679Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.783792Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.783953Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.784489Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.784562Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.784674Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.784741Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.784854Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.784916Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.785030Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.785098Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.785206Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.785275Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.785407Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.785491Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.800121Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.800559Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.800677Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.800881Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.800968Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.801073Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.801156Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.803059Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.803763Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.803834Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-27T11:33:28.809641Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.810284Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.810562Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.810952Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.811385Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.811971Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.812836Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.813637Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.815837Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.816493Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0013] Task initiated on local node
[2026-05-27T11:33:28.822855Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0018] Task initiated on local node
[2026-05-27T11:33:28.826791Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0019] Task initiated on local node
[2026-05-27T11:33:28.827655Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-05-27T11:33:28.830873Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0006] Task initiated on local node
[2026-05-27T11:33:28.832713Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0015] Task initiated on local node
[2026-05-27T11:33:28.834165Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-05-27T11:33:28.835246Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0010] Task initiated on local node
[2026-05-27T11:33:29.382712Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.383910Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.387123Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-05-27T11:33:29.498511Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.499620Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.503006Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0005] Task initiated on local node
[2026-05-27T11:33:29.532161Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.533418Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.536921Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0003] Task initiated on local node
[2026-05-27T11:33:29.948482Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.949492Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.952580Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-05-27T11:33:29.981756Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.982882Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.986323Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0014] Task initiated on local node
[2026-05-27T11:33:30.448450Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.449389Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.452274Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-05-27T11:33:30.513725Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.514648Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.518023Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0009] Task initiated on local node
[2026-05-27T11:33:30.679545Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.680537Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.683497Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0015] Task initiated on local node
[2026-05-27T11:33:30.745137Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.746069Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.749474Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0011] Task initiated on local node
[2026-05-27T11:33:30.860841Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.861728Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.865113Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-05-27T11:33:31.377383Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.378344Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.381329Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0012] Task initiated on local node
[2026-05-27T11:33:31.410625Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.411775Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.415158Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0000] Task initiated on local node
[2026-05-27T11:33:31.676697Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.677539Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.680950Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0005] Task initiated on local node
[2026-05-27T11:33:31.710089Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.710940Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.714574Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0013] Task initiated on local node
[2026-05-27T11:33:31.743568Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.745075Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.745356Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.746601Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.749698Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0016] Task initiated on local node
[2026-05-27T11:33:31.750789Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-05-27T11:33:32.162050Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.162808Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.166237Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0014] Task initiated on local node
[2026-05-27T11:33:32.227359Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.228202Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.231909Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-05-27T11:33:32.744204Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.745112Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.748511Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0003] Task initiated on local node
[2026-05-27T11:33:32.809772Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.810615Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.813624Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0006] Task initiated on local node
[2026-05-27T11:33:32.842750Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.843968Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.844422Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.847051Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.847708Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0002] Task initiated on local node
[2026-05-27T11:33:32.849639Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0011] Task initiated on local node
[2026-05-27T11:33:32.862998Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.863723Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.866664Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0009] Task initiated on local node
[2026-05-27T11:33:32.895750Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.896937Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.897231Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.899654Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.900443Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-05-27T11:33:32.902734Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0008] Task initiated on local node
[2026-05-27T11:33:32.964384Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.965148Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.968500Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-05-27T11:33:33.029645Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.029735Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.030434Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.030754Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.034055Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0018] Task initiated on local node
[2026-05-27T11:33:33.063640Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0016] Task initiated on local node
[2026-05-27T11:33:33.095158Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.095233Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.095856Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.096137Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.099088Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-05-27T11:33:33.100148Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-05-27T11:33:33.160579Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.160672Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.161366Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.161673Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.165485Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0007] Task initiated on local node
[2026-05-27T11:33:33.166841Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0017] Task initiated on local node
[2026-05-27T11:33:33.276696Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.277448Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.280742Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-05-27T11:33:33.342018Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.342732Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.345457Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-05-27T11:33:33.407046Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.407149Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.407851Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.408139Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.411441Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-05-27T11:33:33.412151Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-05-27T11:33:33.473409Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.473516Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.474191Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.474663Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.478223Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-05-27T11:33:33.479065Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0004] Task initiated on local node
[2026-05-27T11:33:33.539359Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.539471Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.540096Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.540394Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.543675Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-05-27T11:33:33.544796Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-05-27T11:33:33.605356Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.605448Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.606067Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.606430Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.609551Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-05-27T11:33:33.610532Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0001] Task initiated on local node
[2026-05-27T11:33:33.638888Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.639549Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.642482Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-05-27T11:33:33.754027Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.754714Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.757985Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_000_chr1_0000] Task initiated on local node
[2026-05-27T11:33:33.819629Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.820292Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.823221Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0000] Task initiated on local node
[2026-05-27T11:33:33.884605Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.885299Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.888302Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0019] Task initiated on local node
[2026-05-27T11:33:33.917336Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.918014Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.920927Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-05-27T11:33:33.950072Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.950853Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.951098Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.953179Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.953645Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0012] Task initiated on local node
[2026-05-27T11:33:33.956285Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0008] Task initiated on local node
[2026-05-27T11:33:33.985421Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.986342Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.986584Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.988518Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.989947Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0010] Task initiated on local node
[2026-05-27T11:33:33.991031Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-05-27T11:33:34.020686Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.020944Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.021485Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.024956Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0020] Task initiated on local node
[2026-05-27T11:33:34.989188Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.989710Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.992428Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0007] Task initiated on local node
[2026-05-27T11:33:35.021657Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.025216Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.025578Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.028261Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-05-27T11:33:35.089618Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.254161Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.254709Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.257838Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0004] Task initiated on local node
[2026-05-27T11:33:35.319115Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.433500Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.433668Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.434121Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.434380Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.437376Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0002] Task initiated on local node
[2026-05-27T11:33:35.437931Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0017] Task initiated on local node
[2026-05-27T11:33:35.498892Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.498992Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.813874Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.814357Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.817277Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0020] Task initiated on local node
[2026-05-27T11:33:35.846395Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.061145Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.061644Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.064237Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0001] Task initiated on local node
[2026-05-27T11:33:36.093764Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.094053Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.094199Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.094870Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.095532Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.099647Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-27T11:33:36.102101Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-27T11:33:36.125151Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-27T11:33:36.129159Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.129223Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.129249Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.129478Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.129739Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.132583Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-27T11:33:36.133443Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-27T11:33:36.161945Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.162022Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.162233Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.164626Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-27T11:33:36.194199Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:39.366596Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-27T11:33:47.652913Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-27T11:33:47.652913Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] 
[2026-05-27T11:33:47.652913Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-27T11:33:47.652967Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] 
[2026-05-27T11:33:47.652975Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-27T11:33:47.652982Z] [nf-069a3e3f9760fc8a7de384c9a4e84e6b-25e42-jt4w4] [614_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec