cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta -t 12 --interval chr1_69091-70008.bed.gz -i Sig_18_Blood.recalibrated.bam --algo Haplotyper -d dbsnp_146.hg38.vcf.gz --emit_mode variant germline_control_2.haplotyper.chr1_69091-70008.bed.unfiltered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:18365223, elapsed 0.1s, est remaining 1.2s, peak mem 93MB, user 0.1s, sys 0.2s, output queue size 1084
progress 10% @chr1:37752876, elapsed 0.1s, est remaining 1.1s, peak mem 103MB, user 0.1s, sys 0.6s, output queue size 3737
progress 15% @chr1:65392431, elapsed 0.2s, est remaining 1.1s, peak mem 115MB, user 0.2s, sys 1.0s, output queue size 6459
progress 20% @chr1:113814905, elapsed 0.3s, est remaining 1.0s, peak mem 127MB, user 0.4s, sys 1.3s, output queue size 9219
progress 25% @chr1:155247782, elapsed 0.3s, est remaining 1.0s, peak mem 137MB, user 0.5s, sys 1.6s, output queue size 11562
progress 30% @chr1:179118587, elapsed 0.4s, est remaining 0.9s, peak mem 148MB, user 0.5s, sys 1.9s, output queue size 14044
progress 35% @chr1:209801240, elapsed 0.5s, est remaining 0.8s, peak mem 158MB, user 0.6s, sys 2.3s, output queue size 16467
progress 40% @chr1:246907551, elapsed 0.5s, est remaining 0.8s, peak mem 167MB, user 0.8s, sys 2.6s, output queue size 18872
progress 45% @chr2:32547850, elapsed 0.6s, est remaining 0.7s, peak mem 176MB, user 0.9s, sys 2.9s, output queue size 21159
progress 50% @chr2:74460221, elapsed 0.7s, est remaining 0.7s, peak mem 187MB, user 1.0s, sys 3.2s, output queue size 23652
progress 55% @chr2:113499257, elapsed 0.7s, est remaining 0.6s, peak mem 199MB, user 1.1s, sys 3.6s, output queue size 2578
progress 60% @chr2:170997712, elapsed 0.8s, est remaining 0.5s, peak mem 210MB, user 1.2s, sys 3.9s, output queue size 5276
progress 65% @chr2:202899531, elapsed 0.9s, est remaining 0.5s, peak mem 218MB, user 1.3s, sys 4.2s, output queue size 7567
progress 70% @chr2:233772261, elapsed 0.9s, est remaining 0.4s, peak mem 228MB, user 1.4s, sys 4.5s, output queue size 10025
progress 75% @chr3:25612515, elapsed 1.0s, est remaining 0.3s, peak mem 237MB, user 1.5s, sys 4.8s, output queue size 12247
progress 80% @chr3:49804181, elapsed 1.1s, est remaining 0.3s, peak mem 246MB, user 1.6s, sys 5.2s, output queue size 14725
progress 85% @chr3:101857073, elapsed 1.2s, est remaining 0.2s, peak mem 256MB, user 1.7s, sys 5.5s, output queue size 17362
progress 90% @chr3:139573598, elapsed 1.2s, est remaining 0.1s, peak mem 269MB, user 1.8s, sys 6.0s, output queue size 19954
progress 95% @chr3:187741772, elapsed 1.3s, est remaining 0.1s, peak mem 278MB, user 1.9s, sys 6.3s, output queue size 22369
progress 100% @chr4:10081357, elapsed 1.4s, est remaining 0.0s, peak mem 286MB, user 2.0s, sys 6.6s, output queue size 24598
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 00050654
  features: 1f8bfbff fffa3203
  extended: d19f47ab 00000018
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) Platinum 8175M CPU @ 2.50GHz
threads: 12 max 64
algo: Haplotyper
license: sentieon:Haplotyper=12
input file size: 74559500
output file size: 22307
reads: 1001133
contig: 49651 intervals 9000373 bases
active: 100735 calls 0.038 user 0.018 sys 0.059 real
advance: 51084 calls 0.017 user 0.032 sys 0.052 real
calc: 100735 calls 0.016 user 0.010 sys 0.059 real
done: 1 calls 0.000 user 0.000 sys 0.003 real
execute: 1 calls 0.002 user 0.001 sys 2.563 real
fetch: 100735 calls 0.019 user 0.010 sys 0.061 real
fetch_ref: 100735 calls 0.365 user 0.142 sys 0.705 real
idle: 51 calls 0.009 user 0.042 sys 27.183 real
init: 1 calls 0.070 user 0.000 sys 0.066 real
region: 100735 calls 0.020 user 0.010 sys 0.062 real
tracker: 100735 calls 0.113 user 0.029 sys 0.213 real
overall: 300482560 mem 2.941 user 9.108 sys 3.747 real
ls: cannot access '*.g.vcf.gz': No such file or directory
ls: cannot access '*.g.vcf.gz.tbi': No such file or directory