Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/d87753f97c3f3eb1df8c1b837d7772/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/d87753f97c3f3eb1df8c1b837d7772/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/d87753f97c3f3eb1df8c1b837d7772/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4b/b66aba058a3c62f6e70309bde2f9ef/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/72/4f9d38d7073a74cd262a2408c67e65/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/72/4f9d38d7073a74cd262a2408c67e65/.command.sh
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-dmr0bo_j because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-05-27 11:35:33,819 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-05-27 11:35:34,618 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-05-27 11:35:34,787 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-05-27 11:35:35,707 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-05-27 11:35:35,778 - cnv_pipe.batch.run_model - INFO - Processing cluster 100 with 178 probes
2026-05-27 11:35:36,243 - cnv_pipe.batch.run_model.cluster100 - INFO - Child process started for cluster 100 with 178 probes
2026-05-27 11:36:29,124 - cnv_pipe.batch.run_model.cluster100 - INFO - Child process finished cluster 100. Wrote cluster_100_samples.csv and cluster_100_params.csv
2026-05-27 11:36:29,125 - cnv_pipe.batch.run_model - INFO - Cluster 100 finished in 53.35 seconds. Status: SUCCESS