cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i HCC1395_tumor.md.bam --interval xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz HCC1395_tumor.table
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:119922603, elapsed 0.0s, est remaining 0.7s, peak mem 163MB, user 0.0s, sys 0.0s, output queue size 2276
progress 10% @chr2:20012409, elapsed 0.1s, est remaining 0.6s, peak mem 163MB, user 0.0s, sys 0.0s, output queue size 8078
progress 15% @chr2:188988081, elapsed 0.1s, est remaining 0.6s, peak mem 163MB, user 0.0s, sys 0.0s, output queue size 6379
progress 20% @chr3:97871842, elapsed 0.1s, est remaining 0.6s, peak mem 163MB, user 0.0s, sys 0.0s, output queue size 16846
progress 25% @chr4:88398142, elapsed 0.2s, est remaining 0.5s, peak mem 165MB, user 0.0s, sys 0.0s, output queue size 27114
progress 30% @chr5:146514854, elapsed 0.2s, est remaining 0.5s, peak mem 172MB, user 0.0s, sys 0.0s, output queue size 7048
progress 35% @chr6:127286616, elapsed 0.3s, est remaining 0.5s, peak mem 172MB, user 0.0s, sys 0.0s, output queue size 16991
progress 40% @chr7:128811800, elapsed 0.3s, est remaining 0.4s, peak mem 172MB, user 0.0s, sys 0.0s, output queue size 26481
progress 45% @chr9:1991243, elapsed 0.3s, est remaining 0.4s, peak mem 327MB, user 0.0s, sys 0.0s, output queue size 35853
progress 50% @chr10:32022020, elapsed 0.3s, est remaining 0.3s, peak mem 345MB, user 0.0s, sys 0.1s, output queue size 45790
progress 55% @chr11:48263861, elapsed 0.4s, est remaining 0.3s, peak mem 345MB, user 0.0s, sys 0.1s, output queue size 56253
progress 60% @chr12:21818150, elapsed 0.4s, est remaining 0.3s, peak mem 352MB, user 0.0s, sys 0.1s, output queue size 65806
progress 65% @chr13:49203157, elapsed 0.4s, est remaining 0.2s, peak mem 354MB, user 0.0s, sys 0.1s, output queue size 76867
progress 70% @chr15:42684116, elapsed 0.5s, est remaining 0.2s, peak mem 363MB, user 0.0s, sys 0.1s, output queue size 86905
progress 75% @chr16:30946730, elapsed 0.5s, est remaining 0.2s, peak mem 369MB, user 0.0s, sys 0.1s, output queue size 8451
progress 80% @chr17:42500707, elapsed 0.6s, est remaining 0.1s, peak mem 369MB, user 0.0s, sys 0.1s, output queue size 19136
progress 85% @chr19:5686900, elapsed 0.6s, est remaining 0.1s, peak mem 409MB, user 0.0s, sys 0.1s, output queue size 29558
progress 90% @chr19:55807853, elapsed 0.6s, est remaining 0.1s, peak mem 414MB, user 0.0s, sys 0.1s, output queue size 39058
progress 95% @chr22:36300127, elapsed 1.0s, est remaining 0.1s, peak mem 2518MB, user 6.6s, sys 2.0s, output queue size 2398
progress 100% @chr6_GL000251v2_alt:3935649, elapsed 1.0s, est remaining 0.0s, peak mem 2518MB, user 6.6s, sys 2.0s, output queue size 1935
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
input file size: 50811681
reads: 1001320
contig: 201779 intervals 37922265 bases
advance: 208647 calls 1.698 user 0.111 sys 2.245 real
done: 1 calls 0.248 user 0.100 sys 0.349 real
execute: 1 calls 0.002 user 0.010 sys 1.005 real
fetch_reads: 208647 calls 0.079 user 0.000 sys 0.150 real
fetch_ref: 2048 calls 0.002 user 0.012 sys 0.022 real
fetch_vcf: 2048 calls 0.836 user 0.059 sys 0.972 real
idle: 88 calls 0.002 user 0.001 sys 31.511 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
update: 2195 calls 4.779 user 1.785 sys 6.986 real
overall: 2641113088 mem 9.988 user 7.802 sys 2.374 real
ls: cannot access '*.table.post': No such file or directory
ls: cannot access '*.recalibrated.bam': No such file or directory
ls: cannot access '*.recalibrated.bam.bai': No such file or directory
ls: cannot access '*.csv': No such file or directory
ls: cannot access '*.pdf': No such file or directory