Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/d87753f97c3f3eb1df8c1b837d7772/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/d87753f97c3f3eb1df8c1b837d7772/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4b/b66aba058a3c62f6e70309bde2f9ef/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/d87753f97c3f3eb1df8c1b837d7772/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/60/238ef484d1711b854cf9dce997fe28/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/60/238ef484d1711b854cf9dce997fe28/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-rkz67_co because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-05-27 11:37:45,050 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-05-27 11:37:45,863 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-05-27 11:37:46,034 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-05-27 11:37:46,991 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-05-27 11:37:47,159 - cnv_pipe.batch.run_model - INFO - Processing cluster 888 with 180 probes
2026-05-27 11:37:47,531 - cnv_pipe.batch.run_model.cluster888 - INFO - Child process started for cluster 888 with 180 probes
2026-05-27 11:38:41,981 - cnv_pipe.batch.run_model.cluster888 - INFO - Child process finished cluster 888. Wrote cluster_888_samples.csv and cluster_888_params.csv
2026-05-27 11:38:41,982 - cnv_pipe.batch.run_model - INFO - Cluster 888 finished in 54.82 seconds. Status: SUCCESS