Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/2ef7d0d76e7bbe6fa73bbdbcc429b7/HCC1395_tumor.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/60/83bfc2ffc03fa958ec5d2901d330e2/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/2ef7d0d76e7bbe6fa73bbdbcc429b7/HCC1395_tumor.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr20_14085521-14085828.bed.gz
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr20_14085521-14085828.bed.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/60/83bfc2ffc03fa958ec5d2901d330e2/.command.run
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-05-27T11:33:27.210117Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-27T11:33:27.212489Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-27T11:33:27.212508Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-27T11:33:27.212512Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-27T11:33:27.212516Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXBVyCQq'
[2026-05-27T11:33:27.212520Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-27T11:33:27.212526Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-27T11:33:27.212529Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-27T11:33:27.212533Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-05-27T11:33:27.212537Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-27T11:33:27.212540Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-27T11:33:27.212544Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-27T11:33:27.212548Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-27T11:33:27.212552Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-27T11:33:27.213090Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-27T11:33:27.213397Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-27T11:33:27.219266Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-27T11:33:27.219924Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-27T11:33:27.220055Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-27T11:33:27.220285Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-27T11:33:27.220582Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.220990Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.221079Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_002_chr3_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.221152Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.221269Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.221337Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.221472Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.221540Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.221725Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.221838Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.222307Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.222438Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T11:33:27.222576Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.223211Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0005' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.223652Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0005' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.225335Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0006' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.225490Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0006' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.225984Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-27T11:33:27.226306Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0007' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.226645Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0007' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.226881Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0008' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.226956Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0008' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.227081Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0009' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.227153Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0009' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.227269Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0010' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.227333Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0010' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.227450Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0011' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.227516Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0011' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.227777Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0012' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.228056Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0012' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.228173Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0013' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.228267Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0013' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.228447Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0014' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.228515Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0014' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.228642Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0015' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.228729Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0015' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.228897Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0016' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.228967Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0016' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.229108Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.229243Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.229705Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.229776Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.229891Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.229956Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.230063Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.230130Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.230243Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.230308Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.230473Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.230544Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.230646Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.230733Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.231003Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.231420Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.231531Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.231594Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.231706Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.231769Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.231874Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.231938Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.232048Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.232112Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.232223Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.232289Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.232402Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.232616Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.233126Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.233187Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.233785Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.233855Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.233969Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.234035Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.234350Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.234838Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.236357Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.236928Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.237053Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.237124Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.237236Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.237304Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.237427Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.237502Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.237620Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.237686Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.237797Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.237879Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.238224Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.238812Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.238923Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.238986Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.239100Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.239169Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.239276Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.239341Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.239458Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.239519Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.239714Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.239778Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.256495Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.256990Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.257065Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.257332Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.257406Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.257532Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.257601Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.257733Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.257803Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.257851Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-27T11:33:27.262054Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:27.262849Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0014' from sub-workflow 'CallGenome'
[2026-05-27T11:33:27.263276Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-05-27T11:33:27.263678Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:27.264254Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-05-27T11:33:27.265048Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-05-27T11:33:27.265570Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:27.266372Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:27.268323Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0011' from sub-workflow 'CallGenome'
[2026-05-27T11:33:27.269042Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0014] Task initiated on local node
[2026-05-27T11:33:27.273727Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0012] Task initiated on local node
[2026-05-27T11:33:27.276600Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0006] Task initiated on local node
[2026-05-27T11:33:27.279068Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0000] Task initiated on local node
[2026-05-27T11:33:27.282181Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0004] Task initiated on local node
[2026-05-27T11:33:27.283652Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0003] Task initiated on local node
[2026-05-27T11:33:27.284935Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0011] Task initiated on local node
[2026-05-27T11:33:27.286024Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0007] Task initiated on local node
[2026-05-27T11:33:27.334731Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:27.335768Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:27.339134Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:27.340177Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0004] Task initiated on local node
[2026-05-27T11:33:27.340679Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:27.343256Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0003] Task initiated on local node
[2026-05-27T11:33:27.348419Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:27.349557Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-05-27T11:33:27.349827Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:27.352238Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0016' from sub-workflow 'CallGenome'
[2026-05-27T11:33:27.352454Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0006] Task initiated on local node
[2026-05-27T11:33:27.355654Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0016] Task initiated on local node
[2026-05-27T11:33:27.417008Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:27.418078Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0006' from sub-workflow 'CallGenome'
[2026-05-27T11:33:27.421503Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0006] Task initiated on local node
[2026-05-27T11:33:27.833771Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:27.834808Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:27.838036Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0001] Task initiated on local node
[2026-05-27T11:33:28.401166Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.402216Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.405501Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0009] Task initiated on local node
[2026-05-27T11:33:28.466823Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.466932Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.467976Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.468499Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.472460Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0014] Task initiated on local node
[2026-05-27T11:33:28.527699Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-05-27T11:33:28.533662Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.534803Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.537803Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0014] Task initiated on local node
[2026-05-27T11:33:28.598974Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.600050Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.603526Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-05-27T11:33:28.714919Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.716045Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0014' from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.719306Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0014] Task initiated on local node
[2026-05-27T11:33:28.780257Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.781397Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.784553Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0007] Task initiated on local node
[2026-05-27T11:33:28.845690Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.846868Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.850177Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0000] Task initiated on local node
[2026-05-27T11:33:28.911495Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.912640Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.916170Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0003] Task initiated on local node
[2026-05-27T11:33:28.977460Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.978611Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.981471Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0001] Task initiated on local node
[2026-05-27T11:33:29.193750Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0016' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.194810Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.197734Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0000] Task initiated on local node
[2026-05-27T11:33:29.309051Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.310379Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.314590Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0010] Task initiated on local node
[2026-05-27T11:33:29.425542Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.425630Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.426632Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.426915Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.430327Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0010] Task initiated on local node
[2026-05-27T11:33:29.431530Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0012] Task initiated on local node
[2026-05-27T11:33:29.491829Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.491926Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.491953Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.492930Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.493174Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0008' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.493366Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.499000Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0008] Task initiated on local node
[2026-05-27T11:33:29.500184Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-05-27T11:33:29.556050Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-05-27T11:33:29.558374Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.559484Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.562971Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0000] Task initiated on local node
[2026-05-27T11:33:29.624219Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.625777Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.629146Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0011] Task initiated on local node
[2026-05-27T11:33:29.740378Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.741528Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.744999Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0011] Task initiated on local node
[2026-05-27T11:33:29.806294Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.806411Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.807838Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0013' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.808464Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.812878Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-05-27T11:33:29.813978Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0013] Task initiated on local node
[2026-05-27T11:33:30.023213Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.023344Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.025313Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.025887Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.029330Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0001] Task initiated on local node
[2026-05-27T11:33:30.030287Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0002] Task initiated on local node
[2026-05-27T11:33:30.058676Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.060766Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.064193Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0004] Task initiated on local node
[2026-05-27T11:33:30.777316Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.778374Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.781670Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-05-27T11:33:30.786625Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.787497Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.790716Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0002] Task initiated on local node
[2026-05-27T11:33:30.819923Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.821033Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0007' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.824586Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0007] Task initiated on local node
[2026-05-27T11:33:31.187004Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.188040Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0013' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.191820Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0013] Task initiated on local node
[2026-05-27T11:33:31.220552Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.221533Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.225202Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0001] Task initiated on local node
[2026-05-27T11:33:31.230241Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.231023Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.233952Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0002] Task initiated on local node
[2026-05-27T11:33:31.263266Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.264270Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.267480Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-05-27T11:33:31.296913Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.298009Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0007' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.300799Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0007] Task initiated on local node
[2026-05-27T11:33:31.313952Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.314973Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.318161Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0002] Task initiated on local node
[2026-05-27T11:33:31.347016Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.348057Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0011' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.351337Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0011] Task initiated on local node
[2026-05-27T11:33:31.364183Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.365447Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.368544Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0003] Task initiated on local node
[2026-05-27T11:33:31.381719Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.382608Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.385779Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0004] Task initiated on local node
[2026-05-27T11:33:31.414770Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.415746Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0006' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.418819Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0006] Task initiated on local node
[2026-05-27T11:33:31.419804Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.420547Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0016' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.423491Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0016] Task initiated on local node
[2026-05-27T11:33:31.485169Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.485266Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0016' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.486155Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.486498Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0015' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.489908Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0009] Task initiated on local node
[2026-05-27T11:33:31.491618Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0015] Task initiated on local node
[2026-05-27T11:33:31.551146Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.552229Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.555614Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0003] Task initiated on local node
[2026-05-27T11:33:31.568601Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.569517Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0012' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.572560Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0012] Task initiated on local node
[2026-05-27T11:33:31.734652Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.735941Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.739711Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0005] Task initiated on local node
[2026-05-27T11:33:31.800508Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.802008Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.805554Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-05-27T11:33:32.167478Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.168439Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.172003Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0001] Task initiated on local node
[2026-05-27T11:33:32.233252Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.234269Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.237337Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0003] Task initiated on local node
[2026-05-27T11:33:32.298523Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.299633Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.302974Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0013] Task initiated on local node
[2026-05-27T11:33:32.332074Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.332877Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.335712Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0000] Task initiated on local node
[2026-05-27T11:33:32.364994Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.366106Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.366360Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.368678Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.369282Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0013] Task initiated on local node
[2026-05-27T11:33:32.371628Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-05-27T11:33:32.432995Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.433094Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.433891Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.434161Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.438146Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0000] Task initiated on local node
[2026-05-27T11:33:33.000469Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.001194Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.004187Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-05-27T11:33:33.033125Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.033911Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.037216Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0001] Task initiated on local node
[2026-05-27T11:33:33.037633Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.038285Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.041319Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0002] Task initiated on local node
[2026-05-27T11:33:33.253208Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.253333Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.254636Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.255281Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.258279Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0003] Task initiated on local node
[2026-05-27T11:33:33.259336Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0005] Task initiated on local node
[2026-05-27T11:33:33.319605Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.319692Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.320530Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.320912Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0012' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.324871Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.325545Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0004] Task initiated on local node
[2026-05-27T11:33:33.326339Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0012] Task initiated on local node
[2026-05-27T11:33:33.326623Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0010' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.329248Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0010] Task initiated on local node
[2026-05-27T11:33:33.358603Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.358704Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.359564Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.359955Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0009' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.363274Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0002] Task initiated on local node
[2026-05-27T11:33:33.364639Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0009] Task initiated on local node
[2026-05-27T11:33:33.424364Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.425276Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.428537Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0008] Task initiated on local node
[2026-05-27T11:33:33.489829Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.490588Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.493458Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0008] Task initiated on local node
[2026-05-27T11:33:33.522862Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.523520Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.526304Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0004] Task initiated on local node
[2026-05-27T11:33:33.555635Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.556324Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0015' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.559038Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0015] Task initiated on local node
[2026-05-27T11:33:33.588527Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.589210Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0008' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.592048Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0008] Task initiated on local node
[2026-05-27T11:33:33.621505Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.622172Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.625000Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0002] Task initiated on local node
[2026-05-27T11:33:33.686453Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.687162Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.690196Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-05-27T11:33:33.700261Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0001] Task initiated on local node
[2026-05-27T11:33:33.703228Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.703303Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.703877Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_002_chr3_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.704124Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.707335Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_002_chr3_0000] Task initiated on local node
[2026-05-27T11:33:33.708170Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-05-27T11:33:33.720294Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.720875Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0005' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.723839Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0005] Task initiated on local node
[2026-05-27T11:33:33.753157Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.753995Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.756197Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_002_chr3_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.757156Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.757555Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0000] Task initiated on local node
[2026-05-27T11:33:33.759975Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0000] Task initiated on local node
[2026-05-27T11:33:33.821459Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.821559Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.822173Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.825613Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0015] Task initiated on local node
[2026-05-27T11:33:33.886580Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.887204Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.890381Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0015] Task initiated on local node
[2026-05-27T11:33:33.951399Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.667500Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.668277Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.671584Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0001] Task initiated on local node
[2026-05-27T11:33:34.732741Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.847258Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.848071Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0009' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.851164Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0009] Task initiated on local node
[2026-05-27T11:33:34.880147Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.944428Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.945116Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0005' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.947885Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0005] Task initiated on local node
[2026-05-27T11:33:34.977152Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.593044Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.593580Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0010' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.596069Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0010] Task initiated on local node
[2026-05-27T11:33:35.625554Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.842208Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.842696Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.845310Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0002] Task initiated on local node
[2026-05-27T11:33:36.874495Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.196205Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.196668Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.198903Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0003] Task initiated on local node
[2026-05-27T11:33:40.228434Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.228701Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.228817Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.229215Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.229556Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.233712Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-27T11:33:40.234927Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-27T11:33:40.235764Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-27T11:33:40.261797Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.261863Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.261886Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.262059Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.262306Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.264711Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-27T11:33:40.265995Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-27T11:33:40.295277Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.295338Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.295500Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.297557Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-27T11:33:40.327323Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:46.143673Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-27T11:34:00.332220Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-27T11:34:00.332220Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] 
[2026-05-27T11:34:00.332220Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-27T11:34:00.332289Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] 
[2026-05-27T11:34:00.332298Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-27T11:34:00.332304Z] [nf-6083bfc2ffc03fa958ec5d2901d330e2-431bf-2clts] [609_1] [WorkflowRunner] Elapsed time for full workflow: 33 sec