Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f0/0807b1e43c42fa8d4c0a9f9e9d9f22/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/89/367c535ff2f0c527efeb80b165cce4/Sig_18_tissue.md.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f0/0807b1e43c42fa8d4c0a9f9e9d9f22/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/altera_v3_targets_noncoding_postQC_hg38.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/89/367c535ff2f0c527efeb80b165cce4/Sig_18_tissue.md.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/foresight/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed
==> STAGING COMPLETE (8 inputs)

cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i Sig_18_tissue.md.bam --algo HsMetricAlgo --targets_list targets/altera_v3_targets_noncoding_postQC_hg38.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed Sig_18_tissue_altera_v3_targets_noncoding_postQC_hg38.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:145000001, elapsed 0.0s, est remaining 0.8s, peak mem 100MB, user 0.1s, sys 0.8s, output queue size 16
progress 10% @chr2:63000001, elapsed 0.1s, est remaining 0.7s, peak mem 100MB, user 0.2s, sys 1.9s, output queue size 10
progress 15% @chr2:226000001, elapsed 0.1s, est remaining 0.7s, peak mem 100MB, user 0.3s, sys 2.9s, output queue size 16
progress 20% @chr3:156000001, elapsed 0.2s, est remaining 0.6s, peak mem 100MB, user 0.5s, sys 4.0s, output queue size 10
progress 25% @chr4:120000001, elapsed 0.2s, est remaining 0.6s, peak mem 100MB, user 0.6s, sys 5.0s, output queue size 5
progress 30% @chr5:87000001, elapsed 0.2s, est remaining 0.5s, peak mem 100MB, user 0.7s, sys 5.9s, output queue size 12
progress 35% @chr6:69000001, elapsed 0.3s, est remaining 0.5s, peak mem 100MB, user 0.8s, sys 7.0s, output queue size 12
progress 40% @chr7:60000001, elapsed 0.3s, est remaining 0.5s, peak mem 100MB, user 0.9s, sys 8.1s, output queue size 9
progress 45% @chr8:45000001, elapsed 0.3s, est remaining 0.4s, peak mem 100MB, user 1.1s, sys 9.0s, output queue size 12
progress 50% @chr9:62000001, elapsed 0.4s, est remaining 0.4s, peak mem 100MB, user 1.3s, sys 10.1s, output queue size 11
progress 55% @chr10:93000001, elapsed 0.4s, est remaining 0.3s, peak mem 100MB, user 1.3s, sys 11.2s, output queue size 8
progress 60% @chr11:128000001, elapsed 0.5s, est remaining 0.3s, peak mem 100MB, user 1.4s, sys 12.2s, output queue size 9
progress 65% @chr13:16000001, elapsed 0.5s, est remaining 0.3s, peak mem 100MB, user 1.6s, sys 13.3s, output queue size 5
progress 70% @chr14:60000001, elapsed 0.5s, est remaining 0.2s, peak mem 100MB, user 1.7s, sys 14.4s, output queue size 15
progress 75% @chr16:15000001, elapsed 0.6s, est remaining 0.2s, peak mem 100MB, user 1.8s, sys 15.3s, output queue size 7
progress 80% @chr18:2000001, elapsed 0.6s, est remaining 0.2s, peak mem 100MB, user 1.9s, sys 16.4s, output queue size 24
progress 85% @chr20:25000001, elapsed 0.6s, est remaining 0.1s, peak mem 100MB, user 2.0s, sys 17.4s, output queue size 15
progress 90% @chrX:33000001, elapsed 0.7s, est remaining 0.1s, peak mem 130MB, user 2.5s, sys 18.2s, output queue size 114
progress 95% @chrY:33000001, elapsed 0.8s, est remaining 0.0s, peak mem 141MB, user 2.8s, sys 19.1s, output queue size 271
progress 100% @chr21:41000001, elapsed 1.2s, est remaining 0.0s, peak mem 156MB, user 3.9s, sys 20.5s, output queue size 3664
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 50044781
reads: 1001838
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 1.180 user 10.062 sys 12.226 real
done: 1 calls 0.000 user 0.000 sys 0.003 real
exec_no_coor: 1 calls 0.000 user 0.000 sys 0.000 real
execute: 1 calls 0.008 user 0.001 sys 1.244 real
idle: 77 calls 0.009 user 0.022 sys 43.912 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 163864576 mem 4.186 user 21.144 sys 2.390 real