cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta --algo TNfilter --tumor_sample HCC1395_tumor --normal_sample reference-NA12878 --max_event_count 5 -v positive_somatic_control_1.tnseq.vcf.gz --contamination positive_somatic_control_1.tnseq.contamination_data.tsv --tumor_segments positive_somatic_control_1.tnseq.segments --orientation_priors positive_somatic_control_1.tnseq.orientation_data.tsv positive_somatic_control_1.tnseq.filtered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr2:2000001, elapsed 0.1s, est remaining 1.3s, peak mem 418MB, user 0.3s, sys 2.6s, output queue size 107
progress 10% @chr2:133000001, elapsed 0.1s, est remaining 1.0s, peak mem 418MB, user 1.2s, sys 8.5s, output queue size 263
progress 15% @chr2:212000001, elapsed 0.2s, est remaining 0.9s, peak mem 418MB, user 2.1s, sys 14.7s, output queue size 422
progress 20% @chr3:36000001, elapsed 0.2s, est remaining 0.8s, peak mem 418MB, user 2.9s, sys 20.5s, output queue size 584
progress 25% @chr4:163000001, elapsed 0.2s, est remaining 0.7s, peak mem 418MB, user 3.6s, sys 26.7s, output queue size 199
progress 30% @chr5:124000001, elapsed 0.3s, est remaining 0.6s, peak mem 418MB, user 4.0s, sys 32.0s, output queue size 360
progress 35% @chr5:136000001, elapsed 0.3s, est remaining 0.6s, peak mem 418MB, user 4.6s, sys 37.3s, output queue size 521
progress 40% @chr6:51000001, elapsed 0.3s, est remaining 0.5s, peak mem 418MB, user 5.1s, sys 43.0s, output queue size 682
progress 45% @chr8:41000001, elapsed 0.4s, est remaining 0.5s, peak mem 418MB, user 5.5s, sys 48.5s, output queue size 845
progress 50% @chr9:110000001, elapsed 0.4s, est remaining 0.4s, peak mem 418MB, user 6.1s, sys 54.0s, output queue size 1006
progress 55% @chr11:82000001, elapsed 0.5s, est remaining 0.4s, peak mem 418MB, user 6.6s, sys 59.2s, output queue size 1167
progress 60% @chr12:43000001, elapsed 0.5s, est remaining 0.3s, peak mem 418MB, user 7.1s, sys 64.8s, output queue size 1329
progress 65% @chr13:65000001, elapsed 0.5s, est remaining 0.3s, peak mem 418MB, user 7.7s, sys 70.7s, output queue size 1491
progress 70% @chr14:75000001, elapsed 0.6s, est remaining 0.2s, peak mem 418MB, user 8.2s, sys 76.6s, output queue size 1653
progress 75% @chr16:30000001, elapsed 0.6s, est remaining 0.2s, peak mem 418MB, user 8.7s, sys 82.1s, output queue size 1815
progress 80% @chr17:56000001, elapsed 0.6s, est remaining 0.2s, peak mem 418MB, user 9.5s, sys 87.7s, output queue size 1977
progress 85% @chr20:43000001, elapsed 0.7s, est remaining 0.1s, peak mem 418MB, user 9.9s, sys 93.2s, output queue size 2139
progress 90% @chrX:96000001, elapsed 0.7s, est remaining 0.1s, peak mem 418MB, user 10.6s, sys 98.5s, output queue size 2301
progress 95% @chr5_KI270795v1_alt:1, elapsed 0.8s, est remaining 0.0s, peak mem 418MB, user 11.1s, sys 103.8s, output queue size 2622
progress 100% @HLA-C*04:70:1, elapsed 0.9s, est remaining 0.0s, peak mem 418MB, user 11.4s, sys 113.4s, output queue size 5886
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
signature: 000a06d1
features: 1f8bfbff fffab20b
extended: f1bf27eb 1b407f7e
amd bits: 2c100800 00000121
brand: Intel(R) Xeon(R) 6975P-C
threads: 192 max 192
algo: TNfilter
license: sentieon:TNhaplotyper=192
input file size: 50710
output file size: 43803
reads: 0
contig: 3367 intervals 3217346917 bases
"learn_filter": 513 calls 0.001 user 0.000 sys 0.011 real
"predict_filter": 171 calls 0.012 user 0.020 sys 0.044 real
advance: 3219322 calls 1.019 user 43.681 sys 53.924 real
done: 1 calls 0.002 user 0.000 sys 0.002 real
execute: 1 calls 0.003 user 0.002 sys 0.925 real
fetch_ref: 448 calls 0.010 user 0.044 sys 0.410 real
idle: 20057 calls 0.547 user 0.461 sys 298.380 real
init: 1 calls 0.229 user 0.106 sys 0.502 real
overall: 439111680 mem 13.058 user 117.697 sys 2.513 real