cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta -t 12 --interval chr8_93795409-93795507.bed.gz -i HCC1395_BL.recalibrated.bam --algo Haplotyper -d dbsnp_146.hg38.vcf.gz --emit_mode variant germline_control_1.haplotyper.chr8_93795409-93795507.bed.unfiltered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr8:144259240, elapsed 0.1s, est remaining 1.0s, peak mem 81MB, user 0.0s, sys 0.2s, output queue size 2143
progress 10% @chr9:36903627, elapsed 0.1s, est remaining 0.9s, peak mem 88MB, user 0.1s, sys 0.3s, output queue size 1361
progress 15% @chr9:96758778, elapsed 0.2s, est remaining 1.1s, peak mem 91MB, user 0.1s, sys 0.4s, output queue size 3141
progress 20% @chr9:128945687, elapsed 0.3s, est remaining 1.0s, peak mem 99MB, user 0.1s, sys 0.5s, output queue size 5764
progress 25% @chr10:14934380, elapsed 0.3s, est remaining 0.9s, peak mem 105MB, user 0.2s, sys 0.7s, output queue size 8520
progress 30% @chr10:69199104, elapsed 0.4s, est remaining 0.9s, peak mem 117MB, user 0.2s, sys 0.8s, output queue size 10901
progress 35% @chr10:100507908, elapsed 0.4s, est remaining 0.8s, peak mem 126MB, user 0.2s, sys 0.9s, output queue size 13559
progress 40% @chr11:319838, elapsed 0.5s, est remaining 0.8s, peak mem 130MB, user 0.3s, sys 1.1s, output queue size 16140
progress 45% @chr11:17788085, elapsed 0.6s, est remaining 0.7s, peak mem 138MB, user 0.3s, sys 1.2s, output queue size 18293
progress 50% @chr11:61419922, elapsed 0.6s, est remaining 0.6s, peak mem 145MB, user 0.4s, sys 1.4s, output queue size 20660
progress 55% @chr11:73234160, elapsed 0.8s, est remaining 0.6s, peak mem 151MB, user 0.4s, sys 1.6s, output queue size 23334
progress 60% @chr11:114444541, elapsed 0.8s, est remaining 0.6s, peak mem 159MB, user 0.4s, sys 1.7s, output queue size 25621
progress 65% @chr12:6458645, elapsed 0.9s, est remaining 0.5s, peak mem 168MB, user 0.5s, sys 1.9s, output queue size 946
progress 70% @chr12:31697740, elapsed 1.0s, est remaining 0.4s, peak mem 178MB, user 0.5s, sys 2.0s, output queue size 3042
progress 75% @chr12:55968778, elapsed 1.1s, est remaining 0.4s, peak mem 187MB, user 0.5s, sys 2.2s, output queue size 5517
progress 80% @chr12:100058029, elapsed 1.2s, est remaining 0.3s, peak mem 199MB, user 0.6s, sys 2.4s, output queue size 8249
progress 85% @chr12:123783107, elapsed 1.3s, est remaining 0.2s, peak mem 207MB, user 0.6s, sys 2.6s, output queue size 11105
progress 90% @chr13:48479980, elapsed 1.4s, est remaining 0.2s, peak mem 213MB, user 0.7s, sys 2.7s, output queue size 13483
progress 95% @chr14:22610859, elapsed 1.4s, est remaining 0.1s, peak mem 225MB, user 0.7s, sys 2.8s, output queue size 15732
progress 100% @chr14:61778848, elapsed 1.5s, est remaining 0.0s, peak mem 232MB, user 0.7s, sys 2.9s, output queue size 18280
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 12 max 192
algo: Haplotyper
license: sentieon:Haplotyper=12
input file size: 71343278
output file size: 22309
reads: 1001089
contig: 48642 intervals 9000010 bases
active: 98785 calls 0.000 user 0.001 sys 0.018 real
advance: 50143 calls 0.002 user 0.005 sys 0.021 real
calc: 98785 calls 0.000 user 0.000 sys 0.018 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
execute: 1 calls 0.007 user 0.002 sys 2.839 real
fetch: 98785 calls 0.000 user 0.005 sys 0.018 real
fetch_ref: 98785 calls 0.030 user 0.016 sys 0.351 real
idle: 51 calls 0.003 user 0.002 sys 29.000 real
init: 1 calls 0.030 user 0.010 sys 0.042 real
region: 98785 calls 0.000 user 0.004 sys 0.020 real
tracker: 98785 calls 0.017 user 0.005 sys 0.095 real
overall: 244035584 mem 1.123 user 4.362 sys 3.962 real
ls: cannot access '*.g.vcf.gz': No such file or directory
ls: cannot access '*.g.vcf.gz.tbi': No such file or directory