Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/2ef7d0d76e7bbe6fa73bbdbcc429b7/HCC1395_tumor.recalibrated.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr9_110971973-110972217.bed.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/da/3152dfb7b3524886061e79e5f87d08/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/2ef7d0d76e7bbe6fa73bbdbcc429b7/HCC1395_tumor.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/da/3152dfb7b3524886061e79e5f87d08/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr9_110971973-110972217.bed.gz.tbi
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-05-27T11:33:28.767709Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-27T11:33:28.769048Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-27T11:33:28.769091Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-27T11:33:28.769097Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-27T11:33:28.769101Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXWtBCTT'
[2026-05-27T11:33:28.769105Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-27T11:33:28.769111Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-27T11:33:28.769117Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-27T11:33:28.769120Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-05-27T11:33:28.769124Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-27T11:33:28.769132Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-27T11:33:28.769135Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-27T11:33:28.769142Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-27T11:33:28.769146Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-27T11:33:28.769721Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-27T11:33:28.769818Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-27T11:33:28.775392Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-27T11:33:28.775943Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-27T11:33:28.776193Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-27T11:33:28.776453Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-27T11:33:28.776621Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.777258Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.777364Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.777454Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.777620Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.777804Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.778179Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.778459Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.778716Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.779328Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.779442Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.781526Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.781924Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-27T11:33:28.782020Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.782393Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.782490Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.782622Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.782696Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.782823Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.782897Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.783089Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.783163Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.783289Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.783362Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.783508Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.783677Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.784420Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.784500Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.784636Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.784702Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.784812Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.784893Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.785067Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.785178Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.785473Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.785805Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.786246Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.786310Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.786422Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.786482Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.786591Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.786653Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.786763Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.786826Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.786935Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.786997Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.787109Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.787230Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.787410Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.787798Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.787906Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.787971Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.788077Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.788137Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.788268Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.788335Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.788464Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.788530Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.788637Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.788699Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.788814Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.788928Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.789226Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.789671Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.804649Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.804902Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.804976Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.805134Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.805209Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.805297Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.805364Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.805473Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.805538Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.805587Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-27T11:33:28.809217Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.810258Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.810573Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.810982Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.811400Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.812248Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.813208Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.814240Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.815020Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.822871Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0004] Task initiated on local node
[2026-05-27T11:33:28.823996Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0012] Task initiated on local node
[2026-05-27T11:33:28.824532Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0002] Task initiated on local node
[2026-05-27T11:33:28.827611Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0006] Task initiated on local node
[2026-05-27T11:33:28.832042Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0007] Task initiated on local node
[2026-05-27T11:33:28.834233Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0004] Task initiated on local node
[2026-05-27T11:33:28.834392Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0009] Task initiated on local node
[2026-05-27T11:33:28.931765Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.932675Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.935608Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0009] Task initiated on local node
[2026-05-27T11:33:29.598786Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.599774Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.604845Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0005] Task initiated on local node
[2026-05-27T11:33:29.715621Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.716511Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.720403Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0000] Task initiated on local node
[2026-05-27T11:33:29.881694Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.882666Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.885966Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0006] Task initiated on local node
[2026-05-27T11:33:29.947355Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.947492Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.948360Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.948841Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.952538Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0001] Task initiated on local node
[2026-05-27T11:33:29.954180Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0007] Task initiated on local node
[2026-05-27T11:33:30.013952Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.014060Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.014089Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.014836Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.015116Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.018197Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.018650Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0007] Task initiated on local node
[2026-05-27T11:33:30.019270Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0004] Task initiated on local node
[2026-05-27T11:33:30.021587Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0012] Task initiated on local node
[2026-05-27T11:33:30.050894Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.051006Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.051712Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.051964Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.055278Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.055921Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0002] Task initiated on local node
[2026-05-27T11:33:30.056548Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.056756Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0009] Task initiated on local node
[2026-05-27T11:33:30.059100Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0006] Task initiated on local node
[2026-05-27T11:33:30.120788Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.120900Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.120932Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.121665Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.122141Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.122655Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.126667Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0002] Task initiated on local node
[2026-05-27T11:33:30.128038Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0008] Task initiated on local node
[2026-05-27T11:33:30.128970Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0008] Task initiated on local node
[2026-05-27T11:33:30.188562Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.188692Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.189418Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.189781Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.193213Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0008] Task initiated on local node
[2026-05-27T11:33:30.194496Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0000] Task initiated on local node
[2026-05-27T11:33:30.222154Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.222843Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.225390Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0000] Task initiated on local node
[2026-05-27T11:33:30.226418Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.226930Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.229310Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0002] Task initiated on local node
[2026-05-27T11:33:30.291059Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.291175Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.291854Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.292327Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.296398Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0003] Task initiated on local node
[2026-05-27T11:33:30.360506Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0005] Task initiated on local node
[2026-05-27T11:33:30.407421Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.408164Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.411265Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0003] Task initiated on local node
[2026-05-27T11:33:30.440666Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.440768Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.441457Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.441716Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.445162Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0008] Task initiated on local node
[2026-05-27T11:33:30.446129Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.446778Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.449418Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0003] Task initiated on local node
[2026-05-27T11:33:30.499943Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0005] Task initiated on local node
[2026-05-27T11:33:30.510976Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.511077Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.511827Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.512148Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.512929Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0011] Task initiated on local node
[2026-05-27T11:33:30.513855Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.516964Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0010] Task initiated on local node
[2026-05-27T11:33:30.517663Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0013] Task initiated on local node
[2026-05-27T11:33:30.517770Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.520621Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0004] Task initiated on local node
[2026-05-27T11:33:30.582123Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.582834Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.585906Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0001] Task initiated on local node
[2026-05-27T11:33:30.847892Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.848001Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.848697Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.849003Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.852242Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0002] Task initiated on local node
[2026-05-27T11:33:30.853356Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0009] Task initiated on local node
[2026-05-27T11:33:30.913593Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.914396Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.917641Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0004] Task initiated on local node
[2026-05-27T11:33:31.079545Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.080314Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.083205Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0004] Task initiated on local node
[2026-05-27T11:33:31.112338Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.113074Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.115620Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.116118Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0007] Task initiated on local node
[2026-05-27T11:33:31.116523Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.119048Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0001] Task initiated on local node
[2026-05-27T11:33:31.124179Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.124739Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.127182Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0005] Task initiated on local node
[2026-05-27T11:33:31.156653Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.156735Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.156761Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.157324Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.157661Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.157948Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.163834Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0011] Task initiated on local node
[2026-05-27T11:33:31.164083Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0000] Task initiated on local node
[2026-05-27T11:33:31.219765Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0010] Task initiated on local node
[2026-05-27T11:33:31.222761Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.223422Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.226212Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0006] Task initiated on local node
[2026-05-27T11:33:31.239655Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.240287Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.243208Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0000] Task initiated on local node
[2026-05-27T11:33:31.272362Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.273403Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.273720Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.275758Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.277469Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0002] Task initiated on local node
[2026-05-27T11:33:31.278598Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0001] Task initiated on local node
[2026-05-27T11:33:31.340415Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.340546Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.341125Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.341483Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.344576Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_008_chr9_0000] Task initiated on local node
[2026-05-27T11:33:31.345782Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0003] Task initiated on local node
[2026-05-27T11:33:31.406083Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.406220Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.406736Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.407088Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.410119Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0003] Task initiated on local node
[2026-05-27T11:33:31.411268Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0001] Task initiated on local node
[2026-05-27T11:33:31.471796Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.472510Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.475720Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0000] Task initiated on local node
[2026-05-27T11:33:31.537145Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.601651Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.602215Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.605357Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0010] Task initiated on local node
[2026-05-27T11:33:31.666912Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.731346Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.731930Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.735144Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0003] Task initiated on local node
[2026-05-27T11:33:31.796583Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.961214Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.961793Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.964666Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0011] Task initiated on local node
[2026-05-27T11:33:32.026445Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.191277Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.191836Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.195295Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0013] Task initiated on local node
[2026-05-27T11:33:32.256533Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.421341Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.422049Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.425573Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0011] Task initiated on local node
[2026-05-27T11:33:32.486331Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.052241Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.052738Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.056034Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0010] Task initiated on local node
[2026-05-27T11:33:33.117027Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.281777Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.282300Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.284955Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0001] Task initiated on local node
[2026-05-27T11:33:33.346648Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.346967Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.347153Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.347736Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.348256Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.350913Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-27T11:33:33.353216Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-27T11:33:33.354030Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-27T11:33:33.383070Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.383164Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.383190Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.383463Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.383826Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.386815Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-27T11:33:33.387308Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-27T11:33:33.448097Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.448217Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.448499Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.451632Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-27T11:33:33.513184Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.430551Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-27T11:33:39.308121Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-27T11:33:39.308121Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] 
[2026-05-27T11:33:39.308121Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-27T11:33:39.308169Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] 
[2026-05-27T11:33:39.308175Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-27T11:33:39.308181Z] [nf-da3152dfb7b3524886061e79e5f87d08-f8457-gjh9h] [598_1] [WorkflowRunner] Elapsed time for full workflow: 10 sec