File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/da/42939a6e7ffd1ba67ecaa30675adeb/.command.err
Size
62.0 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_1;chr19_15162349-15162662.bed)
Attempt

Content

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[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXX8Q7VE2/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXX8Q7VE2/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXX8Q7VE2/chr19_15162349-15162662.bed.gz.tbi
[2026-05-27T15:31:38.486038Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-27T15:31:38.486806Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-27T15:31:38.486815Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-27T15:31:38.486819Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-27T15:31:38.486823Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXX8Q7VE2'
[2026-05-27T15:31:38.486827Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-27T15:31:38.486832Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-27T15:31:38.486835Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-27T15:31:38.486839Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-05-27T15:31:38.486843Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-27T15:31:38.486846Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-27T15:31:38.486850Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-27T15:31:38.486853Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-27T15:31:38.486857Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-27T15:31:38.487463Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-27T15:31:38.487587Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-27T15:31:38.493263Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-27T15:31:38.494072Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-27T15:31:38.494254Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-27T15:31:38.494582Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-27T15:31:38.494863Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.495274Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.495369Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.495442Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.495564Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.495631Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.495750Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.495814Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.495976Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.496240Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.496701Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.496819Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.497015Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.497545Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.497903Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.498047Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.498213Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.498521Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.498650Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.498870Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.500411Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.500977Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.501130Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-27T15:31:38.501289Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.501409Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.501471Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.501587Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.501651Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.501772Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.501990Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.502346Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.502414Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.502526Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.502630Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.502747Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.502811Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.502929Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.503005Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.503165Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.503233Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.503353Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.503532Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.503935Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.503997Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.504653Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.504724Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.504839Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.504972Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.505508Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.505575Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.505688Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.505754Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.505864Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.505927Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.506042Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.506104Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.506216Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.506282Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.506390Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.506530Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.507057Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.507123Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.507235Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.507299Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.507404Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.507471Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.522696Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.523041Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.523115Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.523280Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.523350Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.523435Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.523500Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.523607Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.523677Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.525110Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-27T15:31:38.526200Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.526860Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.527551Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.528220Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.529599Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.530358Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.532600Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.534227Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0009] Task initiated on local node
[2026-05-27T15:31:38.535510Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.535760Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0014] Task initiated on local node
[2026-05-27T15:31:38.536176Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.541965Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0019] Task initiated on local node
[2026-05-27T15:31:38.546334Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-05-27T15:31:38.547004Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0000] Task initiated on local node
[2026-05-27T15:31:38.549308Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0006] Task initiated on local node
[2026-05-27T15:31:38.552247Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-05-27T15:31:38.553493Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-05-27T15:31:38.653374Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.654071Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.656672Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-05-27T15:31:38.718094Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.718833Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.721481Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-05-27T15:31:38.883225Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.883965Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.887246Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0003] Task initiated on local node
[2026-05-27T15:31:39.299131Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.299926Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.303026Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0012] Task initiated on local node
[2026-05-27T15:31:39.564633Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.565349Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.568081Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-05-27T15:31:39.568891Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.569474Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.572081Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-05-27T15:31:39.601518Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.602184Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.604659Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-05-27T15:31:39.633982Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.634691Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.637216Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_001_chr2_0000] Task initiated on local node
[2026-05-27T15:31:39.698857Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.699555Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.702375Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-05-27T15:31:39.731658Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.732372Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.734817Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0009] Task initiated on local node
[2026-05-27T15:31:39.764500Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.765188Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.767744Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-05-27T15:31:39.797053Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.797729Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.800482Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-05-27T15:31:39.829945Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.830614Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.833123Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0011] Task initiated on local node
[2026-05-27T15:31:39.862432Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.863085Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.865632Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0016] Task initiated on local node
[2026-05-27T15:31:39.977494Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.977574Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.978222Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.978689Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.981441Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0014] Task initiated on local node
[2026-05-27T15:31:39.982084Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0012] Task initiated on local node
[2026-05-27T15:31:40.011344Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.011413Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.011991Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.012275Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.014831Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-05-27T15:31:40.015882Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0007] Task initiated on local node
[2026-05-27T15:31:40.044287Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.044955Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.047652Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0005] Task initiated on local node
[2026-05-27T15:31:40.076846Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.077474Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.079923Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0004] Task initiated on local node
[2026-05-27T15:31:40.743119Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.743847Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.746742Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0008] Task initiated on local node
[2026-05-27T15:31:40.908289Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.908412Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.909020Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.909462Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.912228Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0007] Task initiated on local node
[2026-05-27T15:31:40.913266Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0019] Task initiated on local node
[2026-05-27T15:31:40.941489Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.941568Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.942120Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.942425Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.945015Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0000] Task initiated on local node
[2026-05-27T15:31:40.945622Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0003] Task initiated on local node
[2026-05-27T15:31:40.975121Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.975195Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.975731Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.976181Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.978660Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0011] Task initiated on local node
[2026-05-27T15:31:40.979671Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-05-27T15:31:41.009229Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.009303Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.009808Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.010186Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.012642Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0016] Task initiated on local node
[2026-05-27T15:31:41.013790Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-05-27T15:31:41.042031Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.042113Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.042631Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.043107Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.043684Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.046284Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-05-27T15:31:41.046459Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.049210Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0015] Task initiated on local node
[2026-05-27T15:31:41.050156Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0020] Task initiated on local node
[2026-05-27T15:31:41.079465Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.079999Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.082600Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0001] Task initiated on local node
[2026-05-27T15:31:41.083701Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.084172Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.086453Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0005] Task initiated on local node
[2026-05-27T15:31:41.116012Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.116534Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.119322Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0010] Task initiated on local node
[2026-05-27T15:31:41.132641Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.133151Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.135714Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0018] Task initiated on local node
[2026-05-27T15:31:41.247306Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.247877Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.250695Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-05-27T15:31:41.279668Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.280158Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.282603Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-05-27T15:31:41.344273Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.344832Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.347379Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0002] Task initiated on local node
[2026-05-27T15:31:41.659532Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.660090Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.662877Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0001] Task initiated on local node
[2026-05-27T15:31:41.692124Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.692683Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.695242Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0013] Task initiated on local node
[2026-05-27T15:31:41.856900Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.857472Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.860064Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0010] Task initiated on local node
[2026-05-27T15:31:41.889436Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.889921Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.892749Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0017] Task initiated on local node
[2026-05-27T15:31:42.004200Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.004747Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.007367Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0008] Task initiated on local node
[2026-05-27T15:31:42.036800Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.037282Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.039791Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-05-27T15:31:42.069056Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.069505Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.072079Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0004] Task initiated on local node
[2026-05-27T15:31:42.101501Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.101947Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.104401Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-05-27T15:31:42.133840Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.134342Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.136882Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0006] Task initiated on local node
[2026-05-27T15:31:42.198622Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.199081Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.201690Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-05-27T15:31:42.230979Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.231047Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.231462Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.231919Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.234334Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-05-27T15:31:42.235476Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0015] Task initiated on local node
[2026-05-27T15:31:42.263783Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.263854Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.327801Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.328205Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.330764Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0018] Task initiated on local node
[2026-05-27T15:31:42.360221Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.674705Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.675106Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.677654Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0013] Task initiated on local node
[2026-05-27T15:31:42.707163Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.771132Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.771511Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.774144Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0020] Task initiated on local node
[2026-05-27T15:31:42.803620Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.218111Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.218502Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.221039Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0002] Task initiated on local node
[2026-05-27T15:31:43.250440Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.464606Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.464959Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.467331Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0017] Task initiated on local node
[2026-05-27T15:31:43.496797Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.711014Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.711377Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.713801Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-05-27T15:31:43.743308Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.743543Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.743666Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.743908Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.744446Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.747770Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-27T15:31:43.748778Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-27T15:31:43.749725Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-27T15:31:43.777961Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.778023Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.778046Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.778233Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.778447Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.780924Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-27T15:31:43.781604Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-27T15:31:43.810869Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.810942Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.811113Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.813450Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-27T15:31:43.843140Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.157505Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-27T15:31:49.033424Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-27T15:31:49.033424Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] 
[2026-05-27T15:31:49.033424Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-27T15:31:49.033472Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] 
[2026-05-27T15:31:49.033478Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-27T15:31:49.033484Z] [nf-da42939a6e7ffd1ba67ecaa30675adeb-fb8bd-22qj5] [625_1] [WorkflowRunner] Elapsed time for full workflow: 10 sec