Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/51/badbc58e56a014171c61b7eb9e47f2/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr19_15162349-15162662.bed.gz.tbi
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr19_15162349-15162662.bed.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/51/badbc58e56a014171c61b7eb9e47f2/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0e/a2ccef1525a551970c21f9713564f9/Sig_18_Blood.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0e/a2ccef1525a551970c21f9713564f9/Sig_18_Blood.recalibrated.bam
==> STAGING COMPLETE (10 inputs)

[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXAgm2QR/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXAgm2QR/chr19_15162349-15162662.bed.gz.tbi

Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXAgm2QR/chr19_15162349-15162662.bed.gz.tbi
[2026-05-27T15:31:39.065350Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-27T15:31:39.065910Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-27T15:31:39.065920Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-27T15:31:39.065924Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-27T15:31:39.065928Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXAgm2QR'
[2026-05-27T15:31:39.065932Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-27T15:31:39.065937Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-27T15:31:39.065940Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-27T15:31:39.065944Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-05-27T15:31:39.065947Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-27T15:31:39.065951Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-27T15:31:39.065955Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-27T15:31:39.065958Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-27T15:31:39.065962Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-27T15:31:39.066478Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-27T15:31:39.066564Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-27T15:31:39.072619Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-27T15:31:39.073206Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-27T15:31:39.073407Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-27T15:31:39.073864Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-27T15:31:39.074095Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.074478Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.074569Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.074640Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.074757Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.074823Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.074940Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.075001Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.075114Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.075269Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.075529Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.075593Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.075709Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.075869Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.076061Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.076687Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.076989Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.078478Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.079060Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-27T15:31:39.079216Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.079704Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.079948Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.080071Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.080143Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.080258Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.080327Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.080449Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.080517Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.080649Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.080725Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.080839Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.080907Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.081264Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.081533Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.081649Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.081716Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.081827Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.081892Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.082012Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.082075Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.082187Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.082250Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.082367Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.082466Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.083301Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.083605Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.084030Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.084154Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.084270Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.084334Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.084448Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.084512Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.084642Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.084714Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.084830Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.084891Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.085009Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.085286Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.085675Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.085739Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.085851Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.085915Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.086105Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.086174Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.086281Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.086350Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.099253Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.099374Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.099446Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.099606Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.099700Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.100033Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.100537Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.100665Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.101807Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.101986Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-27T15:31:39.105756Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.106347Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.106925Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.108886Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.109447Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-05-27T15:31:39.109993Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.110525Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.112870Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-05-27T15:31:39.113321Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.113992Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.115403Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.117958Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0019] Task initiated on local node
[2026-05-27T15:31:39.120473Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0010] Task initiated on local node
[2026-05-27T15:31:39.125447Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0018] Task initiated on local node
[2026-05-27T15:31:39.127059Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-05-27T15:31:39.128414Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0006] Task initiated on local node
[2026-05-27T15:31:39.129590Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-05-27T15:31:39.180052Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.181125Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.184097Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0003] Task initiated on local node
[2026-05-27T15:31:39.188994Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.189988Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.193149Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0008] Task initiated on local node
[2026-05-27T15:31:40.006590Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.007428Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.010370Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0011] Task initiated on local node
[2026-05-27T15:31:40.322339Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.323226Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.326240Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0000] Task initiated on local node
[2026-05-27T15:31:40.538226Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.538937Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.541830Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0007] Task initiated on local node
[2026-05-27T15:31:40.603369Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.604134Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.606858Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0016] Task initiated on local node
[2026-05-27T15:31:40.668400Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.669118Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.671854Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0004] Task initiated on local node
[2026-05-27T15:31:40.701342Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.701421Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.702072Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.702302Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.704892Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-05-27T15:31:40.705907Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0019] Task initiated on local node
[2026-05-27T15:31:40.734272Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.734339Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.734949Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.735239Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.738236Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-05-27T15:31:40.739127Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-05-27T15:31:40.799828Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.800527Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.803306Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0002] Task initiated on local node
[2026-05-27T15:31:41.265490Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.266203Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.268902Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-05-27T15:31:41.298184Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.298889Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.301702Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0013] Task initiated on local node
[2026-05-27T15:31:41.363161Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.363907Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.366764Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0007] Task initiated on local node
[2026-05-27T15:31:41.396154Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.396235Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.396893Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.397267Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.400095Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_001_chr2_0000] Task initiated on local node
[2026-05-27T15:31:41.401539Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-05-27T15:31:41.413339Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.413901Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.416296Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0016] Task initiated on local node
[2026-05-27T15:31:41.445740Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.445807Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.446380Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.446610Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.449264Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0000] Task initiated on local node
[2026-05-27T15:31:41.450374Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0018] Task initiated on local node
[2026-05-27T15:31:41.479860Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.480449Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.483332Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0009] Task initiated on local node
[2026-05-27T15:31:41.484276Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.484324Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.484888Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.485513Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.487912Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0017] Task initiated on local node
[2026-05-27T15:31:41.488873Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0014] Task initiated on local node
[2026-05-27T15:31:41.800946Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.801652Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.804407Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0004] Task initiated on local node
[2026-05-27T15:31:41.833606Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.834198Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.836877Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-05-27T15:31:41.948694Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.949375Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.952208Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0012] Task initiated on local node
[2026-05-27T15:31:42.163821Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.164434Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.167158Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-05-27T15:31:42.196494Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.197086Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.199754Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-05-27T15:31:42.261336Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.261928Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.264700Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-05-27T15:31:42.325907Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.326502Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.329236Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0010] Task initiated on local node
[2026-05-27T15:31:42.358347Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.358894Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.361581Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0020] Task initiated on local node
[2026-05-27T15:31:42.623595Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.624210Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.627031Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0011] Task initiated on local node
[2026-05-27T15:31:42.656289Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.656857Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.659267Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-05-27T15:31:42.688913Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.689452Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.691726Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0003] Task initiated on local node
[2026-05-27T15:31:42.721609Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.721688Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.722173Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.722508Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.725516Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-05-27T15:31:42.726340Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0009] Task initiated on local node
[2026-05-27T15:31:42.754706Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.754793Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.755268Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.755798Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.759012Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0001] Task initiated on local node
[2026-05-27T15:31:42.759845Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0005] Task initiated on local node
[2026-05-27T15:31:42.820457Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.821018Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.823725Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0006] Task initiated on local node
[2026-05-27T15:31:42.852989Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.853512Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.856121Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0015] Task initiated on local node
[2026-05-27T15:31:43.018107Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.018662Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.021371Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0014] Task initiated on local node
[2026-05-27T15:31:43.034492Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.034998Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.037824Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0012] Task initiated on local node
[2026-05-27T15:31:43.050831Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.051313Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.053956Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0017] Task initiated on local node
[2026-05-27T15:31:43.067154Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.067606Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.070201Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-05-27T15:31:43.083397Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.083861Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.086286Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0008] Task initiated on local node
[2026-05-27T15:31:43.099758Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.100204Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.102812Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0002] Task initiated on local node
[2026-05-27T15:31:43.116042Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.116487Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.118822Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0013] Task initiated on local node
[2026-05-27T15:31:43.132264Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.132790Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.135188Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-05-27T15:31:43.148772Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.149221Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.151824Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-05-27T15:31:43.165013Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.165443Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.167880Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-05-27T15:31:43.181309Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.245497Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.245913Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.248400Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-05-27T15:31:43.309935Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.325736Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.326135Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.328795Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0001] Task initiated on local node
[2026-05-27T15:31:43.358104Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.772964Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.773024Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.773388Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.773695Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.776233Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0005] Task initiated on local node
[2026-05-27T15:31:43.776954Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-05-27T15:31:43.838335Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.838408Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.052936Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.053009Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.053343Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.053626Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.055952Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0015] Task initiated on local node
[2026-05-27T15:31:44.056688Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0020] Task initiated on local node
[2026-05-27T15:31:44.086720Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.086791Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.200887Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.201257Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.203912Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-05-27T15:31:44.233539Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.233767Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.233892Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.234160Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.234533Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.237738Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-27T15:31:44.238874Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-27T15:31:44.239796Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-27T15:31:44.267444Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.267514Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.267537Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.267719Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.268136Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.270317Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-27T15:31:44.271392Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-27T15:31:44.300634Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.300708Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.300874Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.302901Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-27T15:31:44.332822Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.747868Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-27T15:31:49.623702Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-27T15:31:49.623702Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] 
[2026-05-27T15:31:49.623702Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-27T15:31:49.623746Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] 
[2026-05-27T15:31:49.623752Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-27T15:31:49.623758Z] [nf-51badbc58e56a014171c61b7eb9e47f2-62524-jptp2] [564_1] [WorkflowRunner] Elapsed time for full workflow: 10 sec