cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta -t 12 --interval chr8_93795409-93795507.bed.gz -i Sig_18_Blood.recalibrated.bam --algo Haplotyper -d dbsnp_146.hg38.vcf.gz --emit_mode variant germline_control_2.haplotyper.chr8_93795409-93795507.bed.unfiltered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr8:144250212, elapsed 0.0s, est remaining 0.7s, peak mem 84MB, user 0.0s, sys 0.1s, output queue size 2305
progress 10% @chr9:36833270, elapsed 0.1s, est remaining 0.6s, peak mem 93MB, user 0.0s, sys 0.2s, output queue size 4526
progress 15% @chr9:96641759, elapsed 0.1s, est remaining 0.5s, peak mem 100MB, user 0.1s, sys 0.3s, output queue size 1568
progress 20% @chr9:124861419, elapsed 0.1s, est remaining 0.5s, peak mem 109MB, user 0.1s, sys 0.5s, output queue size 4181
progress 25% @chr10:14908408, elapsed 0.2s, est remaining 0.5s, peak mem 124MB, user 0.1s, sys 0.7s, output queue size 6940
progress 30% @chr10:69191655, elapsed 0.2s, est remaining 0.5s, peak mem 135MB, user 0.1s, sys 0.8s, output queue size 9326
progress 35% @chr10:100502254, elapsed 0.2s, est remaining 0.5s, peak mem 145MB, user 0.2s, sys 1.0s, output queue size 11984
progress 40% @chr11:320565, elapsed 0.3s, est remaining 0.4s, peak mem 159MB, user 0.2s, sys 1.1s, output queue size 14566
progress 45% @chr11:17771665, elapsed 0.3s, est remaining 0.4s, peak mem 165MB, user 0.2s, sys 1.2s, output queue size 16723
progress 50% @chr11:61397774, elapsed 0.4s, est remaining 0.4s, peak mem 177MB, user 0.3s, sys 1.4s, output queue size 19086
progress 55% @chr11:73234160, elapsed 0.4s, est remaining 0.3s, peak mem 186MB, user 0.3s, sys 1.6s, output queue size 21757
progress 60% @chr11:114401698, elapsed 0.4s, est remaining 0.3s, peak mem 198MB, user 0.4s, sys 1.8s, output queue size 24046
progress 65% @chr12:6492271, elapsed 0.5s, est remaining 0.3s, peak mem 207MB, user 0.4s, sys 1.9s, output queue size 26413
progress 70% @chr12:31666087, elapsed 0.5s, est remaining 0.2s, peak mem 214MB, user 0.5s, sys 2.1s, output queue size 28497
progress 75% @chr12:55968778, elapsed 0.6s, est remaining 0.2s, peak mem 228MB, user 0.5s, sys 2.2s, output queue size 30975
progress 80% @chr12:100051079, elapsed 0.6s, est remaining 0.1s, peak mem 238MB, user 0.5s, sys 2.5s, output queue size 33705
progress 85% @chr12:123783107, elapsed 0.6s, est remaining 0.1s, peak mem 250MB, user 0.6s, sys 2.7s, output queue size 36561
progress 90% @chr13:48459668, elapsed 0.7s, est remaining 0.1s, peak mem 259MB, user 0.6s, sys 2.8s, output queue size 38928
progress 95% @chr14:22633768, elapsed 0.7s, est remaining 0.0s, peak mem 270MB, user 0.7s, sys 2.9s, output queue size 41183
progress 100% @chr14:58487007, elapsed 0.7s, est remaining 0.0s, peak mem 279MB, user 0.7s, sys 3.1s, output queue size 43736
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 12 max 192
algo: Haplotyper
license: sentieon:Haplotyper=12
input file size: 74586807
output file size: 22311
reads: 1001133
contig: 48642 intervals 9000010 bases
"assemble": 1 calls 0.000 user 0.000 sys 0.000 real
"assemble_addRead": 1 calls 0.000 user 0.000 sys 0.000 real
"assemble_buildGraph": 2 calls 0.000 user 0.000 sys 0.000 real
"assemble_computecigar": 1 calls 0.000 user 0.000 sys 0.000 real
"assemble_kg_build_calcsize": 2 calls 0.000 user 0.000 sys 0.000 real
"assemble_kg_build_clear": 3 calls 0.000 user 0.000 sys 0.000 real
"assemble_kg_build_prepare": 4 calls 0.000 user 0.000 sys 0.000 real
"assemble_kg_build_threading": 1 calls 0.000 user 0.000 sys 0.000 real
"assemble_kg_op1": 1 calls 0.000 user 0.000 sys 0.000 real
"assemble_kg_op2": 1 calls 0.000 user 0.000 sys 0.000 real
"assemble_kg_op3": 1 calls 0.000 user 0.000 sys 0.000 real
"assemble_sg_clean": 1 calls 0.000 user 0.000 sys 0.000 real
"assemble_sg_create": 1 calls 0.000 user 0.000 sys 0.000 real
"checkGraph": 1 calls 0.000 user 0.000 sys 0.000 real
"findHaplotype": 1 calls 0.000 user 0.000 sys 0.000 real
active: 98785 calls 0.003 user 0.009 sys 0.018 real
advance: 50143 calls 0.011 user 0.015 sys 0.021 real
assemble_region: 1 calls 0.000 user 0.000 sys 0.000 real
calc: 98785 calls 0.015 user 0.017 sys 0.018 real
clip_region: 1 calls 0.000 user 0.000 sys 0.000 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
execute: 1 calls 0.004 user 0.001 sys 1.358 real
fetch: 98785 calls 0.000 user 0.000 sys 0.019 real
fetch_ref: 98786 calls 0.083 user 0.067 sys 0.389 real
fetch_region: 1 calls 0.000 user 0.000 sys 0.000 real
idle: 39 calls 0.002 user 0.011 sys 19.770 real
init: 1 calls 0.032 user 0.018 sys 0.041 real
region: 98785 calls 0.009 user 0.016 sys 0.021 real
tracker: 98785 calls 0.051 user 0.016 sys 0.087 real
trim_region: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 295964672 mem 1.288 user 4.644 sys 2.474 real
ls: cannot access '*.g.vcf.gz': No such file or directory
ls: cannot access '*.g.vcf.gz.tbi': No such file or directory