cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i Sig_18_Blood.md.bam --read_filter QualCalFilter,table=Sig_18_Blood.table,indel=false --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz Sig_18_Blood.table.post --algo ReadWriter Sig_18_Blood.recalibrated.bam
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:156000001, elapsed 0.2s, est remaining 4.0s, peak mem 292MB, user 0.5s, sys 5.0s, output queue size 26
progress 10% @chr2:70000001, elapsed 0.4s, est remaining 3.8s, peak mem 511MB, user 1.0s, sys 11.1s, output queue size 41
progress 15% @chr3:13000001, elapsed 0.6s, est remaining 3.6s, peak mem 580MB, user 1.5s, sys 17.1s, output queue size 13
progress 20% @chr3:176000001, elapsed 0.9s, est remaining 3.6s, peak mem 688MB, user 1.8s, sys 24.4s, output queue size 29
progress 25% @chr4:109000001, elapsed 1.1s, est remaining 3.4s, peak mem 811MB, user 2.3s, sys 31.8s, output queue size 31
progress 30% @chr5:76000001, elapsed 1.4s, est remaining 3.2s, peak mem 877MB, user 2.7s, sys 38.9s, output queue size 33
progress 35% @chr6:73000001, elapsed 1.6s, est remaining 3.0s, peak mem 931MB, user 3.1s, sys 46.0s, output queue size 5
progress 40% @chr7:53000001, elapsed 1.9s, est remaining 2.8s, peak mem 964MB, user 3.4s, sys 53.1s, output queue size 8
progress 45% @chr8:53000001, elapsed 2.1s, est remaining 2.6s, peak mem 1045MB, user 3.8s, sys 60.4s, output queue size 31
progress 50% @chr9:85000001, elapsed 2.4s, est remaining 2.4s, peak mem 1129MB, user 4.2s, sys 67.8s, output queue size 17
progress 55% @chr10:91000001, elapsed 2.6s, est remaining 2.1s, peak mem 1204MB, user 4.5s, sys 75.3s, output queue size 8
progress 60% @chr11:132000001, elapsed 2.9s, est remaining 1.9s, peak mem 1252MB, user 4.9s, sys 82.7s, output queue size 14
progress 65% @chr13:8000001, elapsed 3.1s, est remaining 1.7s, peak mem 1324MB, user 5.2s, sys 90.4s, output queue size 7
progress 70% @chr14:59000001, elapsed 3.4s, est remaining 1.5s, peak mem 1432MB, user 5.8s, sys 98.2s, output queue size 2
progress 75% @chr16:14000001, elapsed 3.6s, est remaining 1.2s, peak mem 1483MB, user 6.1s, sys 105.8s, output queue size 1
progress 80% @chr18:5000001, elapsed 3.9s, est remaining 1.0s, peak mem 1510MB, user 6.5s, sys 113.4s, output queue size 9
progress 85% @chr20:25000001, elapsed 4.2s, est remaining 0.7s, peak mem 1552MB, user 6.8s, sys 120.9s, output queue size 8
progress 90% @chrX:43000001, elapsed 4.7s, est remaining 0.5s, peak mem 2761MB, user 11.3s, sys 125.5s, output queue size 114
progress 95% @chrY:38000001, elapsed 5.0s, est remaining 0.3s, peak mem 2776MB, user 15.0s, sys 129.8s, output queue size 276
progress 100% @chr21:41000001, elapsed 7.1s, est remaining 0.0s, peak mem 2785MB, user 26.6s, sys 135.5s, output queue size 3664
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 384
algo: QualCal ReadWriter
license: sentieon:QualCal=31 sentieon:ReadWriter=31
input file size: 52290604
output file size: 74586807
reads: 1001133
contig: 3367 intervals 3217346917 bases
ReadQualCal::clearEPSVecOne: 8 calls 0.007 user 0.013 sys 0.029 real
ReadQualCal::delayed_init: 1 calls 0.000 user 0.000 sys 0.022 real
ReadQualCal::init: 1 calls 0.000 user 0.000 sys 0.006 real
advance: 3219322 calls 1.693 user 16.745 sys 18.640 real
done: 1 calls 0.326 user 0.667 sys 0.998 real
exec_no_coor: 1 calls 0.000 user 0.000 sys 0.000 real
execute: 1 calls 0.005 user 0.003 sys 7.148 real
fetch: 3219322 calls 0.213 user 17.144 sys 16.512 real
fetch_reads: 3219322 calls 0.328 user 15.678 sys 16.604 real
fetch_ref: 13318 calls 0.042 user 0.049 sys 0.092 real
fetch_vcf: 13318 calls 1.350 user 0.181 sys 1.587 real
idle: 1487 calls 0.685 user 0.394 sys 115.873 real
init: 1 calls 0.000 user 0.000 sys 0.028 real
update: 13537 calls 7.123 user 2.293 sys 10.363 real
write: 3219322 calls 10.063 user 16.894 sys 26.756 real
overall: 2920636416 mem 29.764 user 137.516 sys 9.503 real
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 --algo QualCal --plot --before Sig_18_Blood.table --after Sig_18_Blood.table.post Sig_18_Blood.csv
This software is licensed to bgold@natera.com by Sentieon Inc.
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 384
algo: QualCal
license: sentieon:QualCal=31
ReadQualCal::init: 2 calls 0.017 user 0.003 sys 0.027 real
done: 1 calls 0.034 user 0.015 sys 0.058 real
idle: 61 calls 0.003 user 0.000 sys 31.389 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 81944576 mem 0.054 user 0.063 sys 1.054 real