File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/79/bf4e77cd7935e064bb644d6d171430/.command.log
Size
69.9 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_2;chr10_74133927-74134264.bed)
Attempt

Content

View in new tab 
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr10_74133927-74134264.bed.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/79/bf4e77cd7935e064bb644d6d171430/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr10_74133927-74134264.bed.gz.tbi
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/79/bf4e77cd7935e064bb644d6d171430/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0e/a2ccef1525a551970c21f9713564f9/Sig_18_Blood.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0e/a2ccef1525a551970c21f9713564f9/Sig_18_Blood.recalibrated.bam
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-05-27T15:31:38.609376Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-27T15:31:38.610066Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-27T15:31:38.610076Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-27T15:31:38.610081Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-27T15:31:38.610084Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXgsPZCU'
[2026-05-27T15:31:38.610091Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-27T15:31:38.610095Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-27T15:31:38.610099Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-27T15:31:38.610103Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-05-27T15:31:38.610106Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-27T15:31:38.610110Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-27T15:31:38.610114Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-27T15:31:38.610117Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-27T15:31:38.610121Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-27T15:31:38.610556Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-27T15:31:38.610672Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-27T15:31:38.616435Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-27T15:31:38.617259Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-27T15:31:38.617455Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-27T15:31:38.617733Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-27T15:31:38.618030Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.619372Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.619519Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.619636Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.619743Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.620260Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.620614Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.622038Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.622661Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.622826Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-27T15:31:38.623246Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.623365Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.623497Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.623566Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.623683Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.623753Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.623868Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.623933Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.624212Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.624423Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.624628Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.624735Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.624860Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.624931Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.625046Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.625121Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.625249Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.625315Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.625452Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.625597Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.626012Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.626088Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.626228Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.626293Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.626406Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.626468Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.626576Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.626641Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.626749Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.626811Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.626922Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.626986Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.627304Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.627661Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.627774Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.627837Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.627947Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.628065Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.628176Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.628240Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.628350Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.628417Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.628526Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.628590Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.628812Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.629255Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.629374Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.629441Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.629547Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.629613Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.629722Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.629781Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.629891Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.629953Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.630060Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.630125Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.630233Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.630293Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.630405Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.630749Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.631250Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.631316Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.631420Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.631483Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.647801Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.648451Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.649231Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.649396Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.649628Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.651621Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.652009Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.652265Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0009] Task initiated on local node
[2026-05-27T15:31:38.652325Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.652466Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.652830Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.653173Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.653881Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.655075Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.655378Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.655760Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T15:31:38.656463Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-27T15:31:38.656793Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.658412Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.660683Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.661565Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0010] Task initiated on local node
[2026-05-27T15:31:38.664846Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0007] Task initiated on local node
[2026-05-27T15:31:38.667361Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-05-27T15:31:38.670040Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-05-27T15:31:38.672833Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-05-27T15:31:38.676032Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0002] Task initiated on local node
[2026-05-27T15:31:38.676769Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-05-27T15:31:38.740191Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.740255Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.740949Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.741258Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.744418Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-05-27T15:31:38.774031Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0011] Task initiated on local node
[2026-05-27T15:31:38.805548Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.806386Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.809717Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-05-27T15:31:38.870658Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.871495Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.874284Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-05-27T15:31:38.935525Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.936373Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.939602Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0004] Task initiated on local node
[2026-05-27T15:31:39.201303Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.202164Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.205242Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0007] Task initiated on local node
[2026-05-27T15:31:39.617221Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.618094Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.621176Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-05-27T15:31:39.682277Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.683038Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.685830Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-05-27T15:31:39.715213Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.716024Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.718493Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0008] Task initiated on local node
[2026-05-27T15:31:39.880733Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.881629Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.884074Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0010] Task initiated on local node
[2026-05-27T15:31:39.889279Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.890009Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.892652Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0007] Task initiated on local node
[2026-05-27T15:31:39.954133Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.954220Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.955028Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.955335Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.958415Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0006] Task initiated on local node
[2026-05-27T15:31:39.959194Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0004] Task initiated on local node
[2026-05-27T15:31:40.070016Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.070817Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.073766Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-05-27T15:31:40.102846Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.103638Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.106843Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-05-27T15:31:40.135650Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.136407Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.139127Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0002] Task initiated on local node
[2026-05-27T15:31:40.168325Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.168414Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.169139Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.169435Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.172587Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0001] Task initiated on local node
[2026-05-27T15:31:40.173219Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0005] Task initiated on local node
[2026-05-27T15:31:40.185605Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.186316Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.188692Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-05-27T15:31:40.218340Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.218425Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.219115Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.219507Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.223103Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0011] Task initiated on local node
[2026-05-27T15:31:40.223592Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0003] Task initiated on local node
[2026-05-27T15:31:40.284990Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.285803Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.288366Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_009_chr10_0000] Task initiated on local node
[2026-05-27T15:31:40.349824Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.350610Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.353331Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0009] Task initiated on local node
[2026-05-27T15:31:40.916253Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.917016Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.919938Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0008] Task initiated on local node
[2026-05-27T15:31:40.949060Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.949865Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.952505Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-05-27T15:31:40.981950Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.982692Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.985515Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0009] Task initiated on local node
[2026-05-27T15:31:41.014786Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.015745Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.016160Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.018583Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.018873Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0009] Task initiated on local node
[2026-05-27T15:31:41.019305Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.020602Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.022548Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-05-27T15:31:41.024665Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0000] Task initiated on local node
[2026-05-27T15:31:41.054122Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.054838Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.057241Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-05-27T15:31:41.086776Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.087460Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.090040Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0004] Task initiated on local node
[2026-05-27T15:31:41.151834Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.152569Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.155522Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0001] Task initiated on local node
[2026-05-27T15:31:41.567625Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.568300Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.571527Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0010] Task initiated on local node
[2026-05-27T15:31:41.782842Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.783541Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.786920Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0006] Task initiated on local node
[2026-05-27T15:31:41.947988Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.948680Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.951451Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0005] Task initiated on local node
[2026-05-27T15:31:41.980649Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.981313Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.983967Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0005] Task initiated on local node
[2026-05-27T15:31:42.095412Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.095509Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.096107Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.096372Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.099276Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0004] Task initiated on local node
[2026-05-27T15:31:42.100142Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-05-27T15:31:42.128503Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.128576Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.129149Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.129401Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.132441Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0011] Task initiated on local node
[2026-05-27T15:31:42.133645Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0002] Task initiated on local node
[2026-05-27T15:31:42.161917Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.162504Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.164905Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-05-27T15:31:42.170258Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.170801Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.173002Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0003] Task initiated on local node
[2026-05-27T15:31:42.202559Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.202638Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.203135Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.203365Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.205959Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-05-27T15:31:42.206844Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-05-27T15:31:42.268716Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.268787Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.269353Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.269935Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.272557Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0003] Task initiated on local node
[2026-05-27T15:31:42.273529Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0008] Task initiated on local node
[2026-05-27T15:31:42.484741Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.485382Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.488134Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0001] Task initiated on local node
[2026-05-27T15:31:42.549466Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.550054Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.552825Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-05-27T15:31:42.714341Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.715019Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.718061Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0006] Task initiated on local node
[2026-05-27T15:31:42.746937Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.747468Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.749847Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0011] Task initiated on local node
[2026-05-27T15:31:42.779315Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.779871Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.782250Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0007] Task initiated on local node
[2026-05-27T15:31:42.811856Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.812388Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.814932Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-05-27T15:31:42.820094Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.820539Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.823094Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0010] Task initiated on local node
[2026-05-27T15:31:42.852395Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.852469Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.852935Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.853250Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.856128Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-05-27T15:31:42.856724Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-05-27T15:31:42.885094Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.885198Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.885651Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.885894Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.888493Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0006] Task initiated on local node
[2026-05-27T15:31:42.889640Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0000] Task initiated on local node
[2026-05-27T15:31:42.917911Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.918402Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.920894Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0001] Task initiated on local node
[2026-05-27T15:31:42.950269Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.982301Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.982743Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.985243Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0002] Task initiated on local node
[2026-05-27T15:31:43.014616Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.078665Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.079132Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.081796Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0003] Task initiated on local node
[2026-05-27T15:31:43.111047Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.142908Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.143334Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.145583Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0008] Task initiated on local node
[2026-05-27T15:31:43.175337Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.207174Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.207551Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.209951Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0000] Task initiated on local node
[2026-05-27T15:31:43.239528Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.704777Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.705209Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.707399Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-05-27T15:31:43.737014Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.151864Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.152253Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.154704Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0005] Task initiated on local node
[2026-05-27T15:31:44.184261Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.548977Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.549380Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.551683Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0000] Task initiated on local node
[2026-05-27T15:31:44.581379Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.581629Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.581748Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.581954Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.582334Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.585805Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-27T15:31:44.586872Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-27T15:31:44.587640Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-27T15:31:44.614902Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.614952Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.614973Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.615155Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.615395Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.617688Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-27T15:31:44.618476Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-27T15:31:44.647841Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.647902Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.648072Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.650655Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-27T15:31:44.680372Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:49.204145Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-27T15:31:57.498257Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-27T15:31:57.498257Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] 
[2026-05-27T15:31:57.498257Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-27T15:31:57.498306Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] 
[2026-05-27T15:31:57.498318Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-27T15:31:57.498324Z] [nf-79bf4e77cd7935e064bb644d6d171430-7e53f-56qlp] [580_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec