File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/42/9b65e39ee2c4aafadcb1d377472877/.command.err
Size
61.7 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_1;chr19_15162349-15162662.bed)
Attempt

Content

View in new tab 
[2026-05-27T15:31:33.664593Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-27T15:31:33.670947Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-27T15:31:33.670976Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-27T15:31:33.670981Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-27T15:31:33.670985Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXv9Hs2Y'
[2026-05-27T15:31:33.670988Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-27T15:31:33.670993Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-27T15:31:33.670997Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-27T15:31:33.671000Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-05-27T15:31:33.671004Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-27T15:31:33.671007Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-27T15:31:33.671011Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-27T15:31:33.671014Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-27T15:31:33.671018Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-27T15:31:33.671472Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-27T15:31:33.671589Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-27T15:31:33.677365Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-27T15:31:33.677835Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-27T15:31:33.678488Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-27T15:31:33.678895Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-27T15:31:33.679118Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T15:31:33.679477Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-05-27T15:31:33.679577Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-05-27T15:31:33.679651Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-05-27T15:31:33.679772Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-05-27T15:31:33.679839Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-05-27T15:31:33.679955Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-05-27T15:31:33.680017Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-05-27T15:31:33.680131Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-05-27T15:31:33.680203Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-05-27T15:31:33.680512Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-05-27T15:31:33.680815Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-05-27T15:31:33.680905Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T15:31:33.681183Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-05-27T15:31:33.681456Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-05-27T15:31:33.682070Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-05-27T15:31:33.682456Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-05-27T15:31:33.684188Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-05-27T15:31:33.684444Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-27T15:31:33.684744Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-05-27T15:31:33.684962Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-05-27T15:31:33.685032Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-05-27T15:31:33.685142Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-05-27T15:31:33.685209Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-05-27T15:31:33.685320Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-05-27T15:31:33.685383Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-05-27T15:31:33.685498Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-05-27T15:31:33.685561Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-05-27T15:31:33.685670Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-05-27T15:31:33.685759Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-05-27T15:31:33.686105Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-05-27T15:31:33.686329Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-05-27T15:31:33.686452Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-05-27T15:31:33.686514Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-05-27T15:31:33.686624Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-05-27T15:31:33.686689Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-05-27T15:31:33.686801Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-05-27T15:31:33.686864Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-05-27T15:31:33.687001Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-05-27T15:31:33.687062Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-05-27T15:31:33.687172Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-05-27T15:31:33.687234Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-05-27T15:31:33.687349Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-05-27T15:31:33.687595Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-05-27T15:31:33.688541Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-05-27T15:31:33.688604Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-05-27T15:31:33.688717Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-05-27T15:31:33.688834Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-05-27T15:31:33.688950Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-05-27T15:31:33.689114Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-05-27T15:31:33.689592Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-05-27T15:31:33.689661Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-05-27T15:31:33.689768Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-05-27T15:31:33.689831Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-05-27T15:31:33.689947Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-05-27T15:31:33.690009Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-05-27T15:31:33.690123Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-05-27T15:31:33.690186Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-05-27T15:31:33.690291Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-05-27T15:31:33.690355Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-05-27T15:31:33.690463Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-05-27T15:31:33.690525Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-05-27T15:31:33.690701Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-05-27T15:31:33.691180Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-05-27T15:31:33.691298Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-05-27T15:31:33.691368Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-05-27T15:31:33.705931Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-05-27T15:31:33.706356Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-05-27T15:31:33.706434Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-27T15:31:33.706589Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T15:31:33.706658Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T15:31:33.706745Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T15:31:33.706811Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T15:31:33.706918Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-27T15:31:33.708021Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T15:31:33.708296Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-27T15:31:33.709153Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:33.709877Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-05-27T15:31:33.710326Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-05-27T15:31:33.711007Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-05-27T15:31:33.711704Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-05-27T15:31:33.712898Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-05-27T15:31:33.714111Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-05-27T15:31:33.716528Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-05-27T15:31:33.718113Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-05-27T15:31:33.719252Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-05-27T15:31:33.719569Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0009] Task initiated on local node
[2026-05-27T15:31:33.722828Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0019] Task initiated on local node
[2026-05-27T15:31:33.727312Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0013] Task initiated on local node
[2026-05-27T15:31:33.728397Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-05-27T15:31:33.730717Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0012] Task initiated on local node
[2026-05-27T15:31:33.733597Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-05-27T15:31:33.734692Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0014] Task initiated on local node
[2026-05-27T15:31:33.836592Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:33.836667Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:33.837322Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-05-27T15:31:33.837611Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-05-27T15:31:33.841142Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0015] Task initiated on local node
[2026-05-27T15:31:33.842494Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0003] Task initiated on local node
[2026-05-27T15:31:34.052514Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:34.053294Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-05-27T15:31:34.055993Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-05-27T15:31:34.117322Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:34.118043Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-05-27T15:31:34.120812Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-05-27T15:31:34.432607Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:34.433315Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-05-27T15:31:34.435933Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-05-27T15:31:34.465232Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:34.465948Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-05-27T15:31:34.468445Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0012] Task initiated on local node
[2026-05-27T15:31:34.497916Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:34.498617Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-05-27T15:31:34.501417Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0008] Task initiated on local node
[2026-05-27T15:31:34.762906Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:34.762989Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:34.763631Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-05-27T15:31:34.763968Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-05-27T15:31:34.767145Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0016] Task initiated on local node
[2026-05-27T15:31:34.768038Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0011] Task initiated on local node
[2026-05-27T15:31:34.978753Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:34.978845Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:34.979532Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-05-27T15:31:34.979820Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-05-27T15:31:34.982999Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-05-27T15:31:34.983653Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-05-27T15:31:35.044442Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:35.045093Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-05-27T15:31:35.047404Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0018] Task initiated on local node
[2026-05-27T15:31:35.076864Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:35.077473Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-05-27T15:31:35.079798Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0003] Task initiated on local node
[2026-05-27T15:31:35.109331Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:35.109957Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-05-27T15:31:35.112235Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0009] Task initiated on local node
[2026-05-27T15:31:35.141767Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:35.142373Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-05-27T15:31:35.144769Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-05-27T15:31:35.174345Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:35.174422Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:35.175012Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-05-27T15:31:35.175298Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-05-27T15:31:35.178656Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0000] Task initiated on local node
[2026-05-27T15:31:35.590823Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:35.591572Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-05-27T15:31:35.594190Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-05-27T15:31:35.623511Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:35.624096Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-05-27T15:31:35.626317Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0016] Task initiated on local node
[2026-05-27T15:31:35.655874Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:35.656447Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-05-27T15:31:35.659163Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0005] Task initiated on local node
[2026-05-27T15:31:35.770616Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:35.771325Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-05-27T15:31:35.774163Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0013] Task initiated on local node
[2026-05-27T15:31:35.803361Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:35.804009Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-05-27T15:31:35.806708Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-05-27T15:31:35.819810Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:35.820419Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-05-27T15:31:35.823134Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0011] Task initiated on local node
[2026-05-27T15:31:35.852423Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:35.853013Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-05-27T15:31:35.855357Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0010] Task initiated on local node
[2026-05-27T15:31:35.860703Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:35.861272Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-05-27T15:31:35.863714Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-05-27T15:31:35.893347Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:35.893908Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-05-27T15:31:35.896855Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-05-27T15:31:36.112214Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-05-27T15:31:36.158626Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:36.158709Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:36.159267Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-05-27T15:31:36.159792Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-05-27T15:31:36.162633Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0018] Task initiated on local node
[2026-05-27T15:31:36.164133Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0001] Task initiated on local node
[2026-05-27T15:31:36.192051Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:36.192597Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-05-27T15:31:36.194841Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0008] Task initiated on local node
[2026-05-27T15:31:36.224562Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:36.225056Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-05-27T15:31:36.227588Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0019] Task initiated on local node
[2026-05-27T15:31:36.257040Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:36.257553Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-05-27T15:31:36.259971Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0014] Task initiated on local node
[2026-05-27T15:31:36.289439Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:36.289982Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-05-27T15:31:36.292609Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0020] Task initiated on local node
[2026-05-27T15:31:36.322025Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:36.322531Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-05-27T15:31:36.325240Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-05-27T15:31:36.354512Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:36.355026Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-05-27T15:31:36.357535Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0017] Task initiated on local node
[2026-05-27T15:31:36.569380Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:36.569934Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-05-27T15:31:36.572875Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0002] Task initiated on local node
[2026-05-27T15:31:36.634177Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:36.634694Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-05-27T15:31:36.637548Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0005] Task initiated on local node
[2026-05-27T15:31:36.666671Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:36.667152Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-05-27T15:31:36.669554Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0004] Task initiated on local node
[2026-05-27T15:31:36.731283Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:36.731364Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:36.731841Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-05-27T15:31:36.732275Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-05-27T15:31:36.734942Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0001] Task initiated on local node
[2026-05-27T15:31:36.736089Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-05-27T15:31:36.764379Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:36.764445Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:36.764893Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-05-27T15:31:36.765225Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-05-27T15:31:36.767575Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-05-27T15:31:36.768298Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-05-27T15:31:36.797409Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:36.797474Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:36.797904Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-05-27T15:31:36.798250Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-05-27T15:31:36.800987Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_001_chr2_0000] Task initiated on local node
[2026-05-27T15:31:36.802042Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0007] Task initiated on local node
[2026-05-27T15:31:36.862553Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:36.863035Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-05-27T15:31:36.865858Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-05-27T15:31:37.578982Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:37.579574Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-05-27T15:31:37.582291Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0000] Task initiated on local node
[2026-05-27T15:31:37.643460Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:37.643529Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:37.643551Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:37.643572Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:37.643974Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-05-27T15:31:37.644261Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-05-27T15:31:37.644809Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-05-27T15:31:37.646443Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-05-27T15:31:37.647725Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-05-27T15:31:37.649418Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-05-27T15:31:37.651089Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0007] Task initiated on local node
[2026-05-27T15:31:37.651908Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0006] Task initiated on local node
[2026-05-27T15:31:37.680146Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:37.680211Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:37.680235Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:37.680629Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-05-27T15:31:37.680894Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-05-27T15:31:37.681168Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-05-27T15:31:37.683882Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0004] Task initiated on local node
[2026-05-27T15:31:37.685388Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0015] Task initiated on local node
[2026-05-27T15:31:37.686639Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0010] Task initiated on local node
[2026-05-27T15:31:37.714949Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:37.715017Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:37.715046Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:37.879539Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:37.879933Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-05-27T15:31:37.882353Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0017] Task initiated on local node
[2026-05-27T15:31:37.911655Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.025781Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.025849Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.026189Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.026828Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.029175Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-05-27T15:31:38.030057Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0020] Task initiated on local node
[2026-05-27T15:31:38.059768Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.059834Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.524750Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.525137Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.527635Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0002] Task initiated on local node
[2026-05-27T15:31:38.557134Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.921794Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.922230Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.925094Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0006] Task initiated on local node
[2026-05-27T15:31:38.954153Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.954397Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.954514Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.954750Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.955328Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.958514Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-27T15:31:38.959923Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-27T15:31:38.960958Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-27T15:31:38.988443Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.988510Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.988531Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.988716Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.989148Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.991622Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-27T15:31:38.992005Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-27T15:31:39.021652Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.021727Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.021912Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.024505Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-27T15:31:39.053934Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.368551Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-27T15:31:44.206722Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-27T15:31:44.206722Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] 
[2026-05-27T15:31:44.206722Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-27T15:31:44.206771Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] 
[2026-05-27T15:31:44.206777Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-27T15:31:44.206784Z] [nf-429b65e39ee2c4aafadcb1d377472877-ea2ce-b94hk] [583_1] [WorkflowRunner] Elapsed time for full workflow: 10 sec