cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i Sig_18_tissue.md.bam --interval xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz Sig_18_tissue.table
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:119893964, elapsed 0.0s, est remaining 0.7s, peak mem 172MB, user 0.0s, sys 0.0s, output queue size 5999
progress 10% @chr2:19914037, elapsed 0.1s, est remaining 0.6s, peak mem 172MB, user 0.0s, sys 0.0s, output queue size 2731
progress 15% @chr2:189058429, elapsed 0.1s, est remaining 0.6s, peak mem 181MB, user 0.0s, sys 0.0s, output queue size 13130
progress 20% @chr3:97871842, elapsed 0.1s, est remaining 0.5s, peak mem 190MB, user 0.0s, sys 0.0s, output queue size 23599
progress 25% @chr4:88457270, elapsed 0.2s, est remaining 0.5s, peak mem 190MB, user 0.0s, sys 0.0s, output queue size 33861
progress 30% @chr5:146339548, elapsed 0.2s, est remaining 0.5s, peak mem 208MB, user 0.0s, sys 0.0s, output queue size 43900
progress 35% @chr6:127119291, elapsed 0.2s, est remaining 0.4s, peak mem 208MB, user 0.0s, sys 0.0s, output queue size 53849
progress 40% @chr7:128814638, elapsed 0.3s, est remaining 0.4s, peak mem 222MB, user 0.0s, sys 0.0s, output queue size 7874
progress 45% @chr9:990041, elapsed 0.3s, est remaining 0.4s, peak mem 346MB, user 0.0s, sys 0.0s, output queue size 17250
progress 50% @chr10:32055848, elapsed 0.3s, est remaining 0.3s, peak mem 421MB, user 0.0s, sys 0.1s, output queue size 27176
progress 55% @chr11:48216810, elapsed 0.3s, est remaining 0.3s, peak mem 457MB, user 0.0s, sys 0.1s, output queue size 37647
progress 60% @chr12:22484697, elapsed 0.4s, est remaining 0.3s, peak mem 462MB, user 0.0s, sys 0.1s, output queue size 47226
progress 65% @chr13:49188515, elapsed 0.4s, est remaining 0.2s, peak mem 489MB, user 0.0s, sys 0.1s, output queue size 58248
progress 70% @chr15:42684116, elapsed 0.4s, est remaining 0.2s, peak mem 513MB, user 0.0s, sys 0.1s, output queue size 68311
progress 75% @chr16:30930073, elapsed 0.5s, est remaining 0.2s, peak mem 513MB, user 0.0s, sys 0.1s, output queue size 77845
progress 80% @chr17:42543028, elapsed 0.5s, est remaining 0.1s, peak mem 523MB, user 0.0s, sys 0.1s, output queue size 88534
progress 85% @chr19:5661518, elapsed 0.5s, est remaining 0.1s, peak mem 523MB, user 0.0s, sys 0.1s, output queue size 98943
progress 90% @chr19:55668507, elapsed 0.6s, est remaining 0.1s, peak mem 532MB, user 0.0s, sys 0.1s, output queue size 108442
progress 95% @chr22:36875653, elapsed 0.9s, est remaining 0.0s, peak mem 2541MB, user 6.8s, sys 1.7s, output queue size 2841
progress 100% @chr6_GL000254v2_alt:3881705, elapsed 1.0s, est remaining 0.0s, peak mem 2541MB, user 6.8s, sys 1.7s, output queue size 355
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
input file size: 50047066
reads: 1001838
contig: 201779 intervals 37922265 bases
advance: 208647 calls 1.273 user 0.104 sys 1.980 real
done: 1 calls 0.265 user 0.148 sys 0.416 real
execute: 1 calls 0.014 user 0.001 sys 0.988 real
fetch_reads: 208647 calls 0.025 user 0.005 sys 0.147 real
fetch_ref: 2079 calls 0.010 user 0.009 sys 0.015 real
fetch_vcf: 2079 calls 0.778 user 0.027 sys 0.910 real
idle: 92 calls 0.002 user 0.003 sys 31.609 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
update: 2294 calls 5.879 user 1.501 sys 7.578 real
overall: 2664869888 mem 10.468 user 18.042 sys 2.361 real
ls: cannot access '*.table.post': No such file or directory
ls: cannot access '*.recalibrated.bam': No such file or directory
ls: cannot access '*.recalibrated.bam.bai': No such file or directory
ls: cannot access '*.csv': No such file or directory
ls: cannot access '*.pdf': No such file or directory