File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1c/5ec2292385c856a328b1bf5ff5fdc0/.command.err
Size
60.0 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_1;chr9_110971973-110972217.bed)
Attempt

Content

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[2026-05-27T15:31:39.481315Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-27T15:31:39.484042Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-27T15:31:39.484053Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-27T15:31:39.484057Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-27T15:31:39.484061Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXX7aSvX9'
[2026-05-27T15:31:39.484065Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-27T15:31:39.484070Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-27T15:31:39.484073Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-27T15:31:39.484076Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-05-27T15:31:39.484080Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-27T15:31:39.484084Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-27T15:31:39.484087Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-27T15:31:39.484091Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-27T15:31:39.484094Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-27T15:31:39.484939Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-27T15:31:39.485060Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-27T15:31:39.490684Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-27T15:31:39.491345Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-27T15:31:39.491495Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-27T15:31:39.491965Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-27T15:31:39.492118Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.492748Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.493421Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.493538Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.493824Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.494262Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.494438Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.496177Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.496339Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-27T15:31:39.496613Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.496938Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.497018Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.497131Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.497194Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.497304Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.497368Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.497476Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.497539Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.497649Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.497709Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.497888Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.497968Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.498287Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.498483Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.498638Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.498711Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.499134Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.499199Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.499310Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.499374Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.499486Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.499703Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.500078Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.500146Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.500256Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.500318Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.500439Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.500517Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.500625Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.500685Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.500799Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.500859Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.500976Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.501043Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.501222Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.501612Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.501725Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.501843Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.501957Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.502022Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.502131Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.502196Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.502303Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.502365Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.502476Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.502536Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.502674Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.502793Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.503309Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.503373Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.503482Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.503546Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.503657Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.503753Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.519863Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.520335Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.520459Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.521092Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.521170Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.521473Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.521550Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.521655Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.521827Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.522101Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.522619Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.524068Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.524406Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.524884Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-27T15:31:39.525268Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.527384Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0004] Task initiated on local node
[2026-05-27T15:31:39.527667Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.528627Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.530748Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0003] Task initiated on local node
[2026-05-27T15:31:39.531691Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.532777Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.537286Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0006] Task initiated on local node
[2026-05-27T15:31:39.540116Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0002] Task initiated on local node
[2026-05-27T15:31:39.542743Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0001] Task initiated on local node
[2026-05-27T15:31:39.545154Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0001] Task initiated on local node
[2026-05-27T15:31:39.548764Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0009] Task initiated on local node
[2026-05-27T15:31:39.612125Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.612194Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.612226Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.612797Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.613177Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.613422Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.618745Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0008] Task initiated on local node
[2026-05-27T15:31:39.620328Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0013] Task initiated on local node
[2026-05-27T15:31:39.621852Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0012] Task initiated on local node
[2026-05-27T15:31:39.679024Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.679748Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.682385Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0007] Task initiated on local node
[2026-05-27T15:31:39.944496Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.945288Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.948204Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0001] Task initiated on local node
[2026-05-27T15:31:39.977433Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.978169Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.980982Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0001] Task initiated on local node
[2026-05-27T15:31:40.293045Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.293756Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.296541Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0007] Task initiated on local node
[2026-05-27T15:31:40.309541Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.310237Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.313021Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0008] Task initiated on local node
[2026-05-27T15:31:40.326357Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.327019Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.329878Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0010] Task initiated on local node
[2026-05-27T15:31:40.412906Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0011] Task initiated on local node
[2026-05-27T15:31:40.441050Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.441137Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.441728Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.442219Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.445017Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0007] Task initiated on local node
[2026-05-27T15:31:40.446229Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0006] Task initiated on local node
[2026-05-27T15:31:40.506458Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.506536Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.507153Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.507455Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.510074Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0007] Task initiated on local node
[2026-05-27T15:31:40.510840Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0000] Task initiated on local node
[2026-05-27T15:31:40.539582Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.540228Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.542699Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0004] Task initiated on local node
[2026-05-27T15:31:40.572052Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.572607Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.574878Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0006] Task initiated on local node
[2026-05-27T15:31:40.604556Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.605175Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.607451Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0002] Task initiated on local node
[2026-05-27T15:31:40.637100Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.637724Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.640158Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0003] Task initiated on local node
[2026-05-27T15:31:40.645371Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.645952Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.648225Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0004] Task initiated on local node
[2026-05-27T15:31:40.678120Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.678203Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.678784Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.679301Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.682273Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0011] Task initiated on local node
[2026-05-27T15:31:40.683243Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0000] Task initiated on local node
[2026-05-27T15:31:40.743855Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.744478Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.747121Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0002] Task initiated on local node
[2026-05-27T15:31:40.776356Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.776981Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.779662Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0010] Task initiated on local node
[2026-05-27T15:31:40.808928Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.809500Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.812380Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0001] Task initiated on local node
[2026-05-27T15:31:40.841380Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.841894Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.844465Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0005] Task initiated on local node
[2026-05-27T15:31:40.873862Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.874467Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.876840Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0009] Task initiated on local node
[2026-05-27T15:31:40.906329Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.906895Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.909319Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0012] Task initiated on local node
[2026-05-27T15:31:40.938955Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.939520Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.942131Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0000] Task initiated on local node
[2026-05-27T15:31:40.971555Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.972135Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.974866Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0005] Task initiated on local node
[2026-05-27T15:31:41.036108Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.036701Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.039247Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0013] Task initiated on local node
[2026-05-27T15:31:41.068824Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.068901Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.069419Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.069731Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.072568Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0005] Task initiated on local node
[2026-05-27T15:31:41.073723Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0003] Task initiated on local node
[2026-05-27T15:31:41.102412Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.102985Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.105407Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0004] Task initiated on local node
[2026-05-27T15:31:41.134993Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.135543Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.138264Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0004] Task initiated on local node
[2026-05-27T15:31:41.199507Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.200126Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.203097Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0008] Task initiated on local node
[2026-05-27T15:31:41.232142Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.232695Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.235594Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0000] Task initiated on local node
[2026-05-27T15:31:41.236215Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.236637Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.239376Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0005] Task initiated on local node
[2026-05-27T15:31:41.268691Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.269219Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.271742Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0002] Task initiated on local node
[2026-05-27T15:31:41.285166Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.285678Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.288504Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0010] Task initiated on local node
[2026-05-27T15:31:41.301662Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.302146Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.304606Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0008] Task initiated on local node
[2026-05-27T15:31:41.334402Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.334482Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.334929Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.335168Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.337852Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_008_chr9_0000] Task initiated on local node
[2026-05-27T15:31:41.338977Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0002] Task initiated on local node
[2026-05-27T15:31:41.399192Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.399690Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.402483Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0009] Task initiated on local node
[2026-05-27T15:31:41.464009Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.464541Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.467355Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0006] Task initiated on local node
[2026-05-27T15:31:41.496555Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.497047Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.499671Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0000] Task initiated on local node
[2026-05-27T15:31:41.561316Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.561402Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.561427Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.561886Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.562164Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.562674Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.565970Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0000] Task initiated on local node
[2026-05-27T15:31:41.567235Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0002] Task initiated on local node
[2026-05-27T15:31:41.568298Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0003] Task initiated on local node
[2026-05-27T15:31:41.595568Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.595648Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.596099Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.596381Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.599120Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0001] Task initiated on local node
[2026-05-27T15:31:41.600189Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0011] Task initiated on local node
[2026-05-27T15:31:41.629406Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.629482Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.629512Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.629902Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.632515Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0003] Task initiated on local node
[2026-05-27T15:31:41.661901Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.776074Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.776486Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.779002Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0011] Task initiated on local node
[2026-05-27T15:31:41.808457Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.022810Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.023214Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.025730Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0003] Task initiated on local node
[2026-05-27T15:31:42.055133Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.119154Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.119504Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.121979Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0010] Task initiated on local node
[2026-05-27T15:31:42.151268Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.365541Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.365901Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.368403Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0004] Task initiated on local node
[2026-05-27T15:31:42.398004Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.662484Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.662839Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.664936Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0009] Task initiated on local node
[2026-05-27T15:31:42.694607Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.694831Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.694944Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.695373Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.695896Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.698696Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-27T15:31:42.700017Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-27T15:31:42.701040Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-27T15:31:42.729284Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.729342Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.729362Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.729524Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.729964Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.732351Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-27T15:31:42.733020Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-27T15:31:42.761897Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.761958Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.762120Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.764416Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-27T15:31:42.794063Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:45.162554Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-27T15:31:50.038228Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-27T15:31:50.038228Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] 
[2026-05-27T15:31:50.038228Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-27T15:31:50.038271Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] 
[2026-05-27T15:31:50.038276Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-27T15:31:50.038282Z] [nf-1c5ec2292385c856a328b1bf5ff5fdc0-41210-wfd8m] [579_1] [WorkflowRunner] Elapsed time for full workflow: 10 sec