Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5f/faeff8e6d86a94a2ad3524906ef612/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5f/faeff8e6d86a94a2ad3524906ef612/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b8/512041e8befa4619d47012000cb980/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5f/faeff8e6d86a94a2ad3524906ef612/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c1/948e4ebefd9811b809d7efccbdffa4/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c1/948e4ebefd9811b809d7efccbdffa4/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-tttf6tm2 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-05-27 15:35:58,275 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-05-27 15:35:59,059 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-05-27 15:35:59,226 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-05-27 15:36:00,138 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-05-27 15:36:00,299 - cnv_pipe.batch.run_model - INFO - Processing cluster 907 with 154 probes
2026-05-27 15:36:00,664 - cnv_pipe.batch.run_model.cluster907 - INFO - Child process started for cluster 907 with 154 probes
2026-05-27 15:36:46,712 - cnv_pipe.batch.run_model.cluster907 - INFO - Child process finished cluster 907. Wrote cluster_907_samples.csv and cluster_907_params.csv
2026-05-27 15:36:46,713 - cnv_pipe.batch.run_model - INFO - Cluster 907 finished in 46.41 seconds. Status: SUCCESS