.command.log - Workdir - DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_2;chr4_22420786-22421189.bed)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/2f72921688686f79be23f3d97bf8c3/.command.log
Size: 87.4 KB
Task: DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_2;chr4_22420786-22421189.bed)
Attempt
Content

  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr4_22420786-22421189.bed.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/2f72921688686f79be23f3d97bf8c3/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr4_22420786-22421189.bed.gz
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/2f72921688686f79be23f3d97bf8c3/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0e/a2ccef1525a551970c21f9713564f9/Sig_18_Blood.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0e/a2ccef1525a551970c21f9713564f9/Sig_18_Blood.recalibrated.bam
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-05-27T15:31:39.272710Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-27T15:31:39.273464Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-27T15:31:39.273475Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-27T15:31:39.273479Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-27T15:31:39.273483Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXX0rKZY9'
[2026-05-27T15:31:39.273487Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-27T15:31:39.273492Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-27T15:31:39.273495Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-27T15:31:39.273499Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-05-27T15:31:39.273503Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-27T15:31:39.273506Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-27T15:31:39.273510Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-27T15:31:39.273513Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-27T15:31:39.273517Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-27T15:31:39.274176Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-27T15:31:39.274313Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-27T15:31:39.280042Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-27T15:31:39.280660Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-27T15:31:39.280895Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-27T15:31:39.281248Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-27T15:31:39.281491Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.281936Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.282027Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.282130Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.282253Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.282321Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.282440Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.282502Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.282869Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.283004Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.283096Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.283472Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.283946Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.285476Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.285718Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-27T15:31:39.285886Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.286128Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.286347Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.286463Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.286525Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.286716Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.286786Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.286894Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.286960Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.287066Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.287128Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.287241Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.287304Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.287586Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.287859Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.288119Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.288403Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.288517Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.288578Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.288730Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.288806Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.288920Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.288984Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.289095Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.289160Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.289270Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.289331Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.289471Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.289592Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.289856Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.290272Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.290739Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.290860Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.290976Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.291042Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.291146Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.291213Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.291321Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.291382Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.291490Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.291555Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.291665Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.291790Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.292274Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.292340Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.292451Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.292512Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.292624Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.292687Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.292793Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.292861Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.292971Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.293031Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.293199Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.293280Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.293514Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.294010Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.294144Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.294214Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.295443Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.296060Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.296188Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.296258Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.296371Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.296435Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.296545Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.296606Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.296718Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.296779Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.296886Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.296956Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.297063Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.297282Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.297918Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.297984Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.298117Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.298190Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.298300Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.298363Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.298476Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.298537Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.314383Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.314888Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.314983Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.315195Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.316104Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.316223Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.316305Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.316705Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.316947Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.317312Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.317642Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.318426Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.319052Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.319336Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.319586Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-27T15:31:39.321565Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.321953Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0008] Task initiated on local node
[2026-05-27T15:31:39.322534Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.323648Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.325542Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.326093Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0004] Task initiated on local node
[2026-05-27T15:31:39.331197Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0003] Task initiated on local node
[2026-05-27T15:31:39.333416Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0013] Task initiated on local node
[2026-05-27T15:31:39.335645Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0011] Task initiated on local node
[2026-05-27T15:31:39.339219Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0005] Task initiated on local node
[2026-05-27T15:31:39.341015Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0006] Task initiated on local node
[2026-05-27T15:31:39.341786Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0007] Task initiated on local node
[2026-05-27T15:31:40.157420Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.158445Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.161389Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0009] Task initiated on local node
[2026-05-27T15:31:40.373149Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.374096Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.377122Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0002] Task initiated on local node
[2026-05-27T15:31:40.405994Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.406929Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.409668Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0014] Task initiated on local node
[2026-05-27T15:31:40.438902Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.439817Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.442476Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0005] Task initiated on local node
[2026-05-27T15:31:40.471799Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.471868Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.472715Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.473036Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.475972Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0007] Task initiated on local node
[2026-05-27T15:31:40.476760Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0012] Task initiated on local node
[2026-05-27T15:31:40.537317Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.538218Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.540840Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0007] Task initiated on local node
[2026-05-27T15:31:40.602251Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.603155Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.605958Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0008] Task initiated on local node
[2026-05-27T15:31:40.635077Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.635939Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.638442Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0001] Task initiated on local node
[2026-05-27T15:31:40.749990Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.750963Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.753525Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0005] Task initiated on local node
[2026-05-27T15:31:40.782959Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.783855Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.786349Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0001] Task initiated on local node
[2026-05-27T15:31:40.791451Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.791504Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.792253Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.792504Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.795118Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0012] Task initiated on local node
[2026-05-27T15:31:40.795654Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0011] Task initiated on local node
[2026-05-27T15:31:40.825059Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.825124Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.825957Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.826364Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.829454Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0004] Task initiated on local node
[2026-05-27T15:31:40.830092Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.830587Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0000] Task initiated on local node
[2026-05-27T15:31:40.831081Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.833330Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0002] Task initiated on local node
[2026-05-27T15:31:40.863070Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.863921Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.866440Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0011] Task initiated on local node
[2026-05-27T15:31:41.128702Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.129668Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.132546Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0006] Task initiated on local node
[2026-05-27T15:31:41.243903Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.244861Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.247548Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0014] Task initiated on local node
[2026-05-27T15:31:41.260744Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.261618Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.264104Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0005] Task initiated on local node
[2026-05-27T15:31:41.277433Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.278299Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.280843Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0015] Task initiated on local node
[2026-05-27T15:31:41.294017Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.294098Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.294839Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.295066Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.298496Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0010] Task initiated on local node
[2026-05-27T15:31:41.510091Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.510943Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.513697Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0011] Task initiated on local node
[2026-05-27T15:31:41.518785Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.519557Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.522240Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0003] Task initiated on local node
[2026-05-27T15:31:41.551378Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.552136Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.554557Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0007] Task initiated on local node
[2026-05-27T15:31:41.583961Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.584742Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.587296Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0009] Task initiated on local node
[2026-05-27T15:31:41.749031Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.749888Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.752675Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0000] Task initiated on local node
[2026-05-27T15:31:41.781849Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.782661Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.785294Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0014] Task initiated on local node
[2026-05-27T15:31:41.846567Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.847368Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.850747Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0004] Task initiated on local node
[2026-05-27T15:31:42.042873Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0001] Task initiated on local node
[2026-05-27T15:31:42.061795Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.061872Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.062594Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.063018Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.065751Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0009] Task initiated on local node
[2026-05-27T15:31:42.066601Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0000] Task initiated on local node
[2026-05-27T15:31:42.095166Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.095910Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.098862Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0003] Task initiated on local node
[2026-05-27T15:31:42.127869Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.128603Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.130988Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_003_chr4_0000] Task initiated on local node
[2026-05-27T15:31:42.192570Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.192642Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.193347Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.193710Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.196192Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0000] Task initiated on local node
[2026-05-27T15:31:42.196971Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0003] Task initiated on local node
[2026-05-27T15:31:42.225831Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.226592Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.227085Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.229171Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0002] Task initiated on local node
[2026-05-27T15:31:42.229295Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.231896Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0000] Task initiated on local node
[2026-05-27T15:31:42.261233Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.261947Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.264534Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0013] Task initiated on local node
[2026-05-27T15:31:42.293865Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.294596Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.297149Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0010] Task initiated on local node
[2026-05-27T15:31:42.609188Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.609988Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.613106Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0006] Task initiated on local node
[2026-05-27T15:31:42.642097Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.642866Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.645475Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0008] Task initiated on local node
[2026-05-27T15:31:42.907437Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.908305Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.911133Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0015] Task initiated on local node
[2026-05-27T15:31:42.940171Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.940587Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.941309Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.941611Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.944487Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0001] Task initiated on local node
[2026-05-27T15:31:42.946765Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0008] Task initiated on local node
[2026-05-27T15:31:42.949208Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.949827Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.952232Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0004] Task initiated on local node
[2026-05-27T15:31:42.981781Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.982535Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.985361Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0014] Task initiated on local node
[2026-05-27T15:31:43.197034Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.197794Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.200658Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0013] Task initiated on local node
[2026-05-27T15:31:43.213803Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.214503Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.217108Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0009] Task initiated on local node
[2026-05-27T15:31:43.246318Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.247088Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.247642Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.249066Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.251481Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0012] Task initiated on local node
[2026-05-27T15:31:43.252596Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.252801Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0007] Task initiated on local node
[2026-05-27T15:31:43.253567Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.255860Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0013] Task initiated on local node
[2026-05-27T15:31:43.285417Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.285478Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.286058Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.286359Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.288966Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0000] Task initiated on local node
[2026-05-27T15:31:43.316118Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0009] Task initiated on local node
[2026-05-27T15:31:43.318628Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.318737Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.319330Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.319523Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.322157Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0010] Task initiated on local node
[2026-05-27T15:31:43.322442Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0004] Task initiated on local node
[2026-05-27T15:31:43.351903Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.351967Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.352524Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.352815Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.355677Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0006] Task initiated on local node
[2026-05-27T15:31:43.356459Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0006] Task initiated on local node
[2026-05-27T15:31:43.384725Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.385310Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.387802Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0001] Task initiated on local node
[2026-05-27T15:31:43.599674Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.600374Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.603192Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0004] Task initiated on local node
[2026-05-27T15:31:43.632368Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.633032Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.635924Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0015] Task initiated on local node
[2026-05-27T15:31:43.697219Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.697875Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.700554Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0014] Task initiated on local node
[2026-05-27T15:31:43.729877Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.730528Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.733227Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0010] Task initiated on local node
[2026-05-27T15:31:43.995334Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.995988Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.999084Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0013] Task initiated on local node
[2026-05-27T15:31:44.110246Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.110898Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.113523Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0008] Task initiated on local node
[2026-05-27T15:31:44.126947Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.127569Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.130044Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0009] Task initiated on local node
[2026-05-27T15:31:44.135213Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.135768Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.138325Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0008] Task initiated on local node
[2026-05-27T15:31:44.143565Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.144112Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.146581Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0014] Task initiated on local node
[2026-05-27T15:31:44.159967Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.160489Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.162881Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0001] Task initiated on local node
[2026-05-27T15:31:44.164161Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.164663Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.167184Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0011] Task initiated on local node
[2026-05-27T15:31:44.172213Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.172663Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.175132Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0005] Task initiated on local node
[2026-05-27T15:31:44.204662Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.205193Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.207571Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0002] Task initiated on local node
[2026-05-27T15:31:44.369445Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.370059Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.372878Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0015] Task initiated on local node
[2026-05-27T15:31:44.401994Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.402602Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.405187Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0003] Task initiated on local node
[2026-05-27T15:31:44.434609Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.435223Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.437958Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0012] Task initiated on local node
[2026-05-27T15:31:44.599583Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.599663Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.600220Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.600549Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.603517Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0012] Task initiated on local node
[2026-05-27T15:31:44.604466Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0010] Task initiated on local node
[2026-05-27T15:31:44.632844Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.632921Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.633431Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.633735Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.636267Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0002] Task initiated on local node
[2026-05-27T15:31:44.637171Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0010] Task initiated on local node
[2026-05-27T15:31:44.665774Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.665839Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.666358Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.666649Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.669246Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0003] Task initiated on local node
[2026-05-27T15:31:44.670243Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0007] Task initiated on local node
[2026-05-27T15:31:44.699124Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.699194Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.731264Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.731747Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.734231Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0002] Task initiated on local node
[2026-05-27T15:31:44.763575Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.765137Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.765504Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.767735Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0006] Task initiated on local node
[2026-05-27T15:31:44.797346Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.829299Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.829726Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.832222Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0013] Task initiated on local node
[2026-05-27T15:31:44.861737Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:45.025982Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:45.026424Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-05-27T15:31:45.028551Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0005] Task initiated on local node
[2026-05-27T15:31:45.058183Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:45.372762Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:45.373172Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-05-27T15:31:45.375551Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0011] Task initiated on local node
[2026-05-27T15:31:45.405041Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:45.819690Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:45.820081Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-05-27T15:31:45.822349Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0012] Task initiated on local node
[2026-05-27T15:31:45.851881Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:45.852130Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:45.852240Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-27T15:31:45.852490Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T15:31:45.852651Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T15:31:45.856347Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-27T15:31:45.857551Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-27T15:31:45.858636Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-27T15:31:45.884991Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:45.885052Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:45.885074Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:45.885257Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T15:31:45.886556Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T15:31:45.887321Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-27T15:31:45.889082Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-27T15:31:45.918770Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:45.918830Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:45.918991Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T15:31:45.920889Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-27T15:31:45.950979Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:49.873009Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-27T15:31:58.161823Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-27T15:31:58.161823Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] 
[2026-05-27T15:31:58.161823Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-27T15:31:58.161868Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] 
[2026-05-27T15:31:58.161874Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-27T15:31:58.161880Z] [nf-012f72921688686f79be23f3d97bf8c3-7289d-mxlkf] [572_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec