cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i Sig_18_tissue.md.bam --read_filter QualCalFilter,table=Sig_18_tissue.table,indel=false --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz Sig_18_tissue.table.post --algo ReadWriter Sig_18_tissue.recalibrated.bam
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:162000001, elapsed 0.2s, est remaining 3.0s, peak mem 426MB, user 0.2s, sys 3.9s, output queue size 6
progress 10% @chr2:74000001, elapsed 0.3s, est remaining 2.5s, peak mem 780MB, user 0.5s, sys 7.6s, output queue size 41
progress 15% @chr2:234000001, elapsed 0.4s, est remaining 2.3s, peak mem 942MB, user 0.9s, sys 11.0s, output queue size 2
progress 20% @chr3:152000001, elapsed 0.5s, est remaining 2.1s, peak mem 1113MB, user 1.2s, sys 14.5s, output queue size 1
progress 25% @chr4:115000001, elapsed 0.7s, est remaining 2.0s, peak mem 1341MB, user 1.5s, sys 18.1s, output queue size 4
progress 30% @chr5:79000001, elapsed 0.8s, est remaining 1.8s, peak mem 1562MB, user 1.8s, sys 21.6s, output queue size 7
progress 35% @chr6:67000001, elapsed 0.9s, est remaining 1.7s, peak mem 1677MB, user 2.1s, sys 25.0s, output queue size 4
progress 40% @chr7:53000001, elapsed 1.0s, est remaining 1.5s, peak mem 1793MB, user 2.4s, sys 28.4s, output queue size 2
progress 45% @chr8:56000001, elapsed 1.1s, est remaining 1.4s, peak mem 1925MB, user 2.7s, sys 31.8s, output queue size 1
progress 50% @chr9:71000001, elapsed 1.3s, est remaining 1.3s, peak mem 2015MB, user 3.0s, sys 35.1s, output queue size 2
progress 55% @chr10:92000001, elapsed 1.4s, est remaining 1.1s, peak mem 2081MB, user 3.3s, sys 38.4s, output queue size 3
progress 60% @chr11:124000001, elapsed 1.5s, est remaining 1.0s, peak mem 2136MB, user 3.5s, sys 41.8s, output queue size 9
progress 65% @chr13:14000001, elapsed 1.6s, est remaining 0.9s, peak mem 2175MB, user 3.7s, sys 45.1s, output queue size 1
progress 70% @chr14:60000001, elapsed 1.7s, est remaining 0.7s, peak mem 2231MB, user 3.9s, sys 48.4s, output queue size 1
progress 75% @chr16:12000001, elapsed 1.8s, est remaining 0.6s, peak mem 2268MB, user 4.1s, sys 51.8s, output queue size 1
progress 80% @chr18:1, elapsed 1.9s, est remaining 0.5s, peak mem 2342MB, user 4.3s, sys 55.1s, output queue size 5
progress 85% @chr20:21000001, elapsed 2.1s, est remaining 0.4s, peak mem 2393MB, user 4.7s, sys 58.3s, output queue size 1
progress 90% @chrX:45000001, elapsed 2.5s, est remaining 0.3s, peak mem 2796MB, user 8.2s, sys 59.7s, output queue size 114
progress 95% @chrY:44000001, elapsed 2.6s, est remaining 0.1s, peak mem 2814MB, user 10.2s, sys 60.2s, output queue size 276
progress 100% @chr21:41000001, elapsed 6.3s, est remaining 0.0s, peak mem 2834MB, user 28.3s, sys 61.2s, output queue size 3664
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal ReadWriter
license: sentieon:QualCal=31 sentieon:ReadWriter=31
input file size: 50047066
output file size: 93248828
reads: 1001838
contig: 3367 intervals 3217346917 bases
ReadQualCal::clearEPSVecOne: 8 calls 0.000 user 0.003 sys 0.023 real
ReadQualCal::delayed_init: 1 calls 0.008 user 0.001 sys 0.024 real
ReadQualCal::init: 1 calls 0.000 user 0.000 sys 0.006 real
advance: 3219322 calls 1.797 user 7.242 sys 9.073 real
done: 1 calls 0.369 user 0.401 sys 0.772 real
exec_no_coor: 1 calls 0.000 user 0.000 sys 0.000 real
execute: 1 calls 0.007 user 0.001 sys 6.361 real
fetch: 3219323 calls 0.194 user 7.267 sys 7.885 real
fetch_reads: 3219322 calls 0.314 user 7.069 sys 7.971 real
fetch_ref: 13004 calls 0.040 user 0.009 sys 0.050 real
fetch_vcf: 13004 calls 1.702 user 0.094 sys 1.599 real
idle: 2361 calls 2.098 user 0.305 sys 155.710 real
init: 1 calls 0.008 user 0.001 sys 0.030 real
update: 13229 calls 7.830 user 0.755 sys 9.405 real
write: 3219323 calls 12.697 user 7.469 sys 20.373 real
overall: 2973491200 mem 35.216 user 62.267 sys 8.505 real
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 --algo QualCal --plot --before Sig_18_tissue.table --after Sig_18_tissue.table.post Sig_18_tissue.csv
This software is licensed to bgold@natera.com by Sentieon Inc.
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
ReadQualCal::init: 2 calls 0.019 user 0.011 sys 0.027 real
done: 1 calls 0.030 user 0.020 sys 0.057 real
idle: 61 calls 0.002 user 0.000 sys 31.325 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 83648512 mem 0.057 user 0.045 sys 1.053 real