.command.log - Workdir - DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:VCF_SOMATIC_SNV_INDEL:CONCAT_WHATSHAP_VCFS (positive_somatic_control_2)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6e/db8f944999a72f9c771e275543b752/.command.log
Size: 891 bytes
Task: DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:VCF_SOMATIC_SNV_INDEL:CONCAT_WHATSHAP_VCFS (positive_somatic_control_2)
Attempt

Content

  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6e/db8f944999a72f9c771e275543b752/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a9/85386fc617136a99ebbfe7cda3ba07/positive_somatic_control_2.snv_indel.whatshap.chr5.phased.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6e/db8f944999a72f9c771e275543b752/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1f/8d2622feb7426a70919e2aa4b8ab70/positive_somatic_control_2.snv_indel.whatshap.chr19.phased.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1d/2f9216f5fc407e82b687909088aa52/positive_somatic_control_2.snv_indel.whatshap.chr21.phased.vcf.gz
==> STAGING COMPLETE (5 inputs)

Checking the headers and starting positions of 3 files
ls: positive_somatic_control_2.snv_indel.phased.vcf.gz.csi: No such file or directory