File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/93623dd2914e57054c402fb415136b/.command.err
Size
60.0 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_2;chr9_110971973-110972217.bed)
Attempt

Content

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[2026-05-27T15:31:40.231945Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-27T15:31:40.233553Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-27T15:31:40.233566Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-27T15:31:40.233570Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-27T15:31:40.233574Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXWL6lZr'
[2026-05-27T15:31:40.233578Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-27T15:31:40.233583Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-27T15:31:40.233586Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-27T15:31:40.233590Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-05-27T15:31:40.233594Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-27T15:31:40.233598Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-27T15:31:40.233601Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-27T15:31:40.233605Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-27T15:31:40.233609Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-27T15:31:40.234274Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-27T15:31:40.234397Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-27T15:31:40.240242Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-27T15:31:40.240948Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-27T15:31:40.241147Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-27T15:31:40.241423Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-27T15:31:40.241682Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T15:31:40.242369Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-05-27T15:31:40.242463Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-05-27T15:31:40.242533Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-05-27T15:31:40.242647Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-05-27T15:31:40.242714Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-05-27T15:31:40.243012Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-05-27T15:31:40.243250Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-05-27T15:31:40.243422Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.243587Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-05-27T15:31:40.243660Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-05-27T15:31:40.243893Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-05-27T15:31:40.244101Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-05-27T15:31:40.244706Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-05-27T15:31:40.246447Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-05-27T15:31:40.246680Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-05-27T15:31:40.246810Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-05-27T15:31:40.246910Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-27T15:31:40.247165Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-05-27T15:31:40.247419Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-05-27T15:31:40.247611Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-05-27T15:31:40.247679Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-05-27T15:31:40.247791Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-05-27T15:31:40.247859Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-05-27T15:31:40.247967Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-05-27T15:31:40.248029Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-05-27T15:31:40.248480Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-05-27T15:31:40.248685Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-05-27T15:31:40.248980Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-05-27T15:31:40.249046Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-05-27T15:31:40.249154Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-05-27T15:31:40.249223Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-05-27T15:31:40.249353Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-05-27T15:31:40.249422Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-05-27T15:31:40.249531Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-05-27T15:31:40.249594Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-05-27T15:31:40.249708Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-05-27T15:31:40.249775Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-05-27T15:31:40.250017Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-05-27T15:31:40.250394Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-05-27T15:31:40.250513Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-05-27T15:31:40.250578Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-05-27T15:31:40.250690Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-05-27T15:31:40.250756Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-05-27T15:31:40.250867Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-05-27T15:31:40.250930Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-05-27T15:31:40.251043Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-05-27T15:31:40.251107Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-05-27T15:31:40.251278Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-05-27T15:31:40.251344Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-05-27T15:31:40.251476Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-05-27T15:31:40.251604Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-05-27T15:31:40.252054Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-05-27T15:31:40.252120Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-05-27T15:31:40.252243Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-05-27T15:31:40.252311Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-05-27T15:31:40.252490Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-05-27T15:31:40.252559Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-05-27T15:31:40.252667Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-05-27T15:31:40.252729Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-05-27T15:31:40.252844Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-05-27T15:31:40.252905Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-05-27T15:31:40.253046Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-05-27T15:31:40.253166Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-05-27T15:31:40.268980Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-05-27T15:31:40.269090Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-05-27T15:31:40.269157Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-27T15:31:40.269317Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T15:31:40.269391Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T15:31:40.269482Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T15:31:40.269549Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T15:31:40.269661Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-27T15:31:40.269732Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T15:31:40.269783Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-27T15:31:40.272179Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.272747Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.274196Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.274498Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.275427Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.275951Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.277063Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.278473Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.279691Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.282448Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0012] Task initiated on local node
[2026-05-27T15:31:40.286918Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0011] Task initiated on local node
[2026-05-27T15:31:40.289051Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0009] Task initiated on local node
[2026-05-27T15:31:40.290367Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0006] Task initiated on local node
[2026-05-27T15:31:40.292290Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0004] Task initiated on local node
[2026-05-27T15:31:40.293541Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0002] Task initiated on local node
[2026-05-27T15:31:40.295877Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0006] Task initiated on local node
[2026-05-27T15:31:40.296615Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0003] Task initiated on local node
[2026-05-27T15:31:40.395861Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.395953Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.395981Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.396725Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.397337Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.397604Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.401749Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0006] Task initiated on local node
[2026-05-27T15:31:40.403357Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0004] Task initiated on local node
[2026-05-27T15:31:40.404396Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0000] Task initiated on local node
[2026-05-27T15:31:40.463608Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.464394Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.467455Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0004] Task initiated on local node
[2026-05-27T15:31:40.496662Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.497413Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.500454Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0001] Task initiated on local node
[2026-05-27T15:31:40.505166Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.505805Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.508354Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0008] Task initiated on local node
[2026-05-27T15:31:40.569997Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.570768Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.574074Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0007] Task initiated on local node
[2026-05-27T15:31:40.635196Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.635950Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.638721Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0007] Task initiated on local node
[2026-05-27T15:31:40.668096Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.668863Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.672127Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0004] Task initiated on local node
[2026-05-27T15:31:40.783246Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.783981Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.787027Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0005] Task initiated on local node
[2026-05-27T15:31:40.848471Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.848535Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.849183Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.849444Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.852083Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0005] Task initiated on local node
[2026-05-27T15:31:40.853111Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0011] Task initiated on local node
[2026-05-27T15:31:40.881541Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.882140Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.884490Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0000] Task initiated on local node
[2026-05-27T15:31:41.096584Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.097323Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.100507Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0001] Task initiated on local node
[2026-05-27T15:31:41.161509Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.162202Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.165073Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0001] Task initiated on local node
[2026-05-27T15:31:41.194227Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.194836Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.197292Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0004] Task initiated on local node
[2026-05-27T15:31:41.226751Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.227411Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.229965Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0010] Task initiated on local node
[2026-05-27T15:31:41.592115Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.592791Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.595737Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0013] Task initiated on local node
[2026-05-27T15:31:41.657009Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.657630Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.660514Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0012] Task initiated on local node
[2026-05-27T15:31:41.721731Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.721813Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.722382Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.722936Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.725713Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0000] Task initiated on local node
[2026-05-27T15:31:41.726900Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0010] Task initiated on local node
[2026-05-27T15:31:41.756032Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.756629Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.759439Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0001] Task initiated on local node
[2026-05-27T15:31:41.772513Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.773047Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.775856Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0004] Task initiated on local node
[2026-05-27T15:31:41.780807Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.781321Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.783810Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0011] Task initiated on local node
[2026-05-27T15:31:41.813313Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.813383Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.813404Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.813875Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.814178Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.815431Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.816154Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0000] Task initiated on local node
[2026-05-27T15:31:41.818688Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0006] Task initiated on local node
[2026-05-27T15:31:41.845225Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0003] Task initiated on local node
[2026-05-27T15:31:41.847648Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.847694Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.848148Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.848560Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.851284Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0000] Task initiated on local node
[2026-05-27T15:31:41.852276Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0009] Task initiated on local node
[2026-05-27T15:31:41.912788Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.913313Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.915849Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0005] Task initiated on local node
[2026-05-27T15:31:42.127734Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.128379Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.131066Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0001] Task initiated on local node
[2026-05-27T15:31:42.160334Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.160841Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.163663Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0008] Task initiated on local node
[2026-05-27T15:31:42.375467Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.376076Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.379114Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0002] Task initiated on local node
[2026-05-27T15:31:42.440354Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.440930Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.443755Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0005] Task initiated on local node
[2026-05-27T15:31:42.472754Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.473246Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.475774Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0003] Task initiated on local node
[2026-05-27T15:31:42.505128Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.505630Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.508271Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0003] Task initiated on local node
[2026-05-27T15:31:42.513222Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.513689Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.516164Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0010] Task initiated on local node
[2026-05-27T15:31:42.517308Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.517700Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.520260Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0001] Task initiated on local node
[2026-05-27T15:31:42.549458Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.549526Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.549992Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.550458Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.552304Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.552960Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0002] Task initiated on local node
[2026-05-27T15:31:42.553565Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.556069Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0007] Task initiated on local node
[2026-05-27T15:31:42.556842Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0010] Task initiated on local node
[2026-05-27T15:31:42.557822Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.558200Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.560654Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0003] Task initiated on local node
[2026-05-27T15:31:42.590128Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.590195Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.590216Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.590620Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.590908Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.591289Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.593728Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0008] Task initiated on local node
[2026-05-27T15:31:42.595600Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_008_chr9_0000] Task initiated on local node
[2026-05-27T15:31:42.620029Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0008] Task initiated on local node
[2026-05-27T15:31:42.624951Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.625018Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.625407Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.625669Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.628727Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0002] Task initiated on local node
[2026-05-27T15:31:42.641683Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.642114Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.644761Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0000] Task initiated on local node
[2026-05-27T15:31:42.645823Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.646228Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.648748Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0009] Task initiated on local node
[2026-05-27T15:31:42.677720Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0011] Task initiated on local node
[2026-05-27T15:31:42.678246Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.678307Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.678330Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.678351Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.678724Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.679070Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.681219Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0002] Task initiated on local node
[2026-05-27T15:31:42.682436Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.682938Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.683099Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0009] Task initiated on local node
[2026-05-27T15:31:42.685405Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0003] Task initiated on local node
[2026-05-27T15:31:42.714902Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.714970Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.714992Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.828993Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.829344Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.831361Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0013] Task initiated on local node
[2026-05-27T15:31:42.861182Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.075411Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.075744Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.078004Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0007] Task initiated on local node
[2026-05-27T15:31:43.107686Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.139464Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.139787Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.141929Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0002] Task initiated on local node
[2026-05-27T15:31:43.171689Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.171904Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.172015Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.172488Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.172770Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.175722Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-27T15:31:43.176995Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-27T15:31:43.178075Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-27T15:31:43.205589Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.205647Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.205668Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.205839Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.206126Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.208081Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-27T15:31:43.209037Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-27T15:31:43.238701Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.238760Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.238921Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.241226Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-27T15:31:43.270767Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:45.890447Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-27T15:31:50.765168Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-27T15:31:50.765168Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] 
[2026-05-27T15:31:50.765168Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-27T15:31:50.765240Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] 
[2026-05-27T15:31:50.765247Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-27T15:31:50.765253Z] [nf-0193623dd2914e57054c402fb415136b-8befc-mb6hc] [558_1] [WorkflowRunner] Elapsed time for full workflow: 10 sec