cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta --algo TNfilter --tumor_sample Sig_18_tissue --normal_sample reference-NA12878 --max_event_count 5 -v positive_somatic_control_2.tnseq.vcf.gz --contamination positive_somatic_control_2.tnseq.contamination_data.tsv --tumor_segments positive_somatic_control_2.tnseq.segments --orientation_priors positive_somatic_control_2.tnseq.orientation_data.tsv positive_somatic_control_2.tnseq.filtered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:171000001, elapsed 0.0s, est remaining 0.9s, peak mem 417MB, user 0.1s, sys 1.8s, output queue size 94
progress 10% @chr2:71000001, elapsed 0.1s, est remaining 0.8s, peak mem 417MB, user 0.4s, sys 7.4s, output queue size 255
progress 15% @chr2:237000001, elapsed 0.1s, est remaining 0.7s, peak mem 417MB, user 0.6s, sys 13.7s, output queue size 270
progress 20% @chr3:60000001, elapsed 0.2s, est remaining 0.7s, peak mem 417MB, user 1.0s, sys 20.5s, output queue size 310
progress 25% @chr4:136000001, elapsed 0.2s, est remaining 0.6s, peak mem 417MB, user 1.4s, sys 26.9s, output queue size 471
progress 30% @chr5:163000001, elapsed 0.2s, est remaining 0.5s, peak mem 417MB, user 2.0s, sys 33.1s, output queue size 221
progress 35% @chr6:47000001, elapsed 0.3s, est remaining 0.5s, peak mem 417MB, user 2.3s, sys 38.0s, output queue size 382
progress 40% @chr6:124000001, elapsed 0.3s, est remaining 0.5s, peak mem 417MB, user 2.6s, sys 42.3s, output queue size 544
progress 45% @chr8:38000001, elapsed 0.3s, est remaining 0.4s, peak mem 417MB, user 3.0s, sys 47.7s, output queue size 705
progress 50% @chr8:129000001, elapsed 0.4s, est remaining 0.4s, peak mem 417MB, user 3.3s, sys 53.1s, output queue size 867
progress 55% @chr10:125000001, elapsed 0.4s, est remaining 0.3s, peak mem 417MB, user 3.8s, sys 59.2s, output queue size 1028
progress 60% @chr12:24000001, elapsed 0.4s, est remaining 0.3s, peak mem 417MB, user 4.2s, sys 64.4s, output queue size 1190
progress 65% @chr11:110000001, elapsed 0.5s, est remaining 0.2s, peak mem 417MB, user 4.6s, sys 69.3s, output queue size 1352
progress 70% @chr14:7000001, elapsed 0.5s, est remaining 0.2s, peak mem 417MB, user 5.5s, sys 71.9s, output queue size 177
progress 75% @chr16:36000001, elapsed 0.6s, est remaining 0.2s, peak mem 417MB, user 5.9s, sys 78.3s, output queue size 339
progress 80% @chr17:81000001, elapsed 0.6s, est remaining 0.1s, peak mem 417MB, user 6.2s, sys 85.2s, output queue size 501
progress 85% @chr20:18000001, elapsed 0.6s, est remaining 0.1s, peak mem 417MB, user 6.8s, sys 91.7s, output queue size 663
progress 90% @chrX:78000001, elapsed 0.7s, est remaining 0.1s, peak mem 417MB, user 7.5s, sys 97.8s, output queue size 824
progress 95% @chr3_KI270779v1_alt:1, elapsed 0.7s, est remaining 0.0s, peak mem 417MB, user 8.0s, sys 103.6s, output queue size 1167
progress 100% @chrUn_JTFH01001885v1_decoy:1, elapsed 0.8s, est remaining 0.0s, peak mem 417MB, user 8.3s, sys 114.6s, output queue size 4410
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
signature: 000a06d1
features: 1f8bfbff fffab20b
extended: f1bf27eb 1b407f7e
amd bits: 2c100800 00000121
brand: Intel(R) Xeon(R) 6975P-C
threads: 192 max 192
algo: TNfilter
license: sentieon:TNhaplotyper=192
input file size: 65401
output file size: 51152
reads: 0
contig: 3367 intervals 3217346917 bases
"learn_filter": 780 calls 0.002 user 0.000 sys 0.015 real
"predict_filter": 260 calls 0.068 user 0.002 sys 0.042 real
advance: 3219322 calls 0.501 user 46.550 sys 53.844 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
execute: 1 calls 0.005 user 0.005 sys 0.844 real
fetch_ref: 692 calls 0.003 user 0.020 sys 0.022 real
idle: 20057 calls 0.593 user 0.156 sys 285.927 real
init: 1 calls 0.191 user 0.101 sys 0.427 real
overall: 437538816 mem 9.868 user 117.502 sys 2.383 real