File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/06/971b8e7d6a87b5dedbeb720c192a2f/.command.err
Size
62.0 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_2;chr19_15162349-15162662.bed)
Attempt

Content

View in new tab 
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXKbSczm/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXKbSczm/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXKbSczm/chr19_15162349-15162662.bed.gz.tbi
[2026-05-27T15:31:36.974393Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-27T15:31:36.976975Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-27T15:31:36.976996Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-27T15:31:36.977001Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-27T15:31:36.977005Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXKbSczm'
[2026-05-27T15:31:36.977009Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-27T15:31:36.977014Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-27T15:31:36.977017Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-27T15:31:36.977021Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-05-27T15:31:36.977024Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-27T15:31:36.977028Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-27T15:31:36.977031Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-27T15:31:36.977035Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-27T15:31:36.977038Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-27T15:31:36.977648Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-27T15:31:36.977758Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-27T15:31:36.983432Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-27T15:31:36.984087Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-27T15:31:36.984328Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-27T15:31:36.984424Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-27T15:31:36.984595Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.985227Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T15:31:36.985615Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.985893Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.987512Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.988110Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.988281Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-27T15:31:36.988465Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.988845Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.988986Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.989103Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.989164Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.989273Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.989332Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.989439Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.989500Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.989605Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.989669Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.989775Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.989835Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.990094Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.990327Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.990461Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.990532Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.990643Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.990705Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.990818Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.990878Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.990990Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.991055Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.991163Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.991290Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.991453Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.991596Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.991978Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.992044Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.992154Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.992218Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.992346Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.992406Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.992520Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.992584Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.992693Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.992757Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.993763Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.994082Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.994199Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.994325Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.994457Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.994527Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.994639Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.994705Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.994817Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.994884Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.995000Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.995068Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.995508Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.995828Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.995936Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.996000Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.996108Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.996175Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.996288Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.996349Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.996453Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.996517Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-05-27T15:31:37.011531Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-05-27T15:31:37.011915Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-05-27T15:31:37.012098Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:37.012223Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-27T15:31:37.012971Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T15:31:37.013032Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-05-27T15:31:37.013262Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T15:31:37.013548Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-05-27T15:31:37.015365Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-05-27T15:31:37.015709Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T15:31:37.016291Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-05-27T15:31:37.016680Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T15:31:37.017499Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-05-27T15:31:37.018130Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-27T15:31:37.018952Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-05-27T15:31:37.019111Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T15:31:37.019601Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-27T15:31:37.020610Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-05-27T15:31:37.022671Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-05-27T15:31:37.023555Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0004] Task initiated on local node
[2026-05-27T15:31:37.029043Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-05-27T15:31:37.029938Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0019] Task initiated on local node
[2026-05-27T15:31:37.032328Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-05-27T15:31:37.036201Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-05-27T15:31:37.037063Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0005] Task initiated on local node
[2026-05-27T15:31:37.039888Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-05-27T15:31:37.040398Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0016] Task initiated on local node
[2026-05-27T15:31:37.103416Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:37.104166Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-05-27T15:31:37.107238Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-05-27T15:31:37.218435Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:37.219288Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-05-27T15:31:37.222320Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0009] Task initiated on local node
[2026-05-27T15:31:37.835058Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:37.835860Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-05-27T15:31:37.838678Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0014] Task initiated on local node
[2026-05-27T15:31:38.050422Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.050534Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.051216Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.051637Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.055376Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-05-27T15:31:38.056426Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0015] Task initiated on local node
[2026-05-27T15:31:38.168326Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.169132Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.172132Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0012] Task initiated on local node
[2026-05-27T15:31:38.383921Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.384708Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.387698Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-05-27T15:31:38.448685Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.449458Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.452250Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-05-27T15:31:38.513653Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.513745Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.514442Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.514769Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.517552Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-05-27T15:31:38.519126Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0011] Task initiated on local node
[2026-05-27T15:31:38.546733Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.547350Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.549619Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0006] Task initiated on local node
[2026-05-27T15:31:38.555021Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.555680Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.558018Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0009] Task initiated on local node
[2026-05-27T15:31:38.587580Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.588253Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.591057Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0001] Task initiated on local node
[2026-05-27T15:31:38.802844Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.803645Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.806832Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-05-27T15:31:38.836034Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.836702Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.839170Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-05-27T15:31:38.900821Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.901495Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.903950Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-05-27T15:31:38.909109Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.909719Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.912177Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0002] Task initiated on local node
[2026-05-27T15:31:38.941637Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.942281Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.944815Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-05-27T15:31:38.974433Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.975115Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.977881Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0019] Task initiated on local node
[2026-05-27T15:31:39.007263Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.007914Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.010450Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0000] Task initiated on local node
[2026-05-27T15:31:39.222331Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.222454Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.223121Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.223510Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.226626Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0013] Task initiated on local node
[2026-05-27T15:31:39.227489Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-05-27T15:31:39.255963Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.256632Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.259318Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-05-27T15:31:39.264261Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.264773Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.267573Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0020] Task initiated on local node
[2026-05-27T15:31:39.630167Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.630932Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.633976Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0015] Task initiated on local node
[2026-05-27T15:31:39.695202Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.695875Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.698624Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0004] Task initiated on local node
[2026-05-27T15:31:39.703701Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.704307Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.706886Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0011] Task initiated on local node
[2026-05-27T15:31:39.736203Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.736295Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.736831Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.737079Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.740033Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0005] Task initiated on local node
[2026-05-27T15:31:39.740464Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0016] Task initiated on local node
[2026-05-27T15:31:39.769628Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.769711Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.770222Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.770464Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.773923Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-05-27T15:31:39.774822Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0007] Task initiated on local node
[2026-05-27T15:31:39.803269Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.803919Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.806575Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-05-27T15:31:39.835893Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.836491Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.839096Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0001] Task initiated on local node
[2026-05-27T15:31:39.868580Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.869208Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.872102Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0008] Task initiated on local node
[2026-05-27T15:31:39.933282Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.933999Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.936561Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0006] Task initiated on local node
[2026-05-27T15:31:39.965927Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.966490Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.969284Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0018] Task initiated on local node
[2026-05-27T15:31:40.130830Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.131617Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.134378Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_001_chr2_0000] Task initiated on local node
[2026-05-27T15:31:40.195584Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.196151Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.198989Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0000] Task initiated on local node
[2026-05-27T15:31:40.260276Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.260870Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.263574Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0017] Task initiated on local node
[2026-05-27T15:31:40.292759Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.293422Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.296043Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0013] Task initiated on local node
[2026-05-27T15:31:40.325431Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.326028Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.328617Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0012] Task initiated on local node
[2026-05-27T15:31:40.358010Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.358737Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.361341Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0003] Task initiated on local node
[2026-05-27T15:31:40.623252Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.623924Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.626879Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0007] Task initiated on local node
[2026-05-27T15:31:40.655913Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.656449Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.659219Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-05-27T15:31:41.021687Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.022286Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.025271Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0020] Task initiated on local node
[2026-05-27T15:31:41.054281Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.054837Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.057448Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0014] Task initiated on local node
[2026-05-27T15:31:41.087005Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.087097Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.087126Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.087591Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.087923Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.088451Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.091016Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0002] Task initiated on local node
[2026-05-27T15:31:41.093212Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-05-27T15:31:41.094271Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0010] Task initiated on local node
[2026-05-27T15:31:41.120917Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.121423Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.124108Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0018] Task initiated on local node
[2026-05-27T15:31:41.153372Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.153912Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.156048Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.157008Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-05-27T15:31:41.171957Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.172402Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.174866Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0008] Task initiated on local node
[2026-05-27T15:31:41.204246Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.211921Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.526551Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.527017Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.529633Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-05-27T15:31:41.560110Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.724481Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.724933Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.727502Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0003] Task initiated on local node
[2026-05-27T15:31:41.756913Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.871116Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.871529Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.873715Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0010] Task initiated on local node
[2026-05-27T15:31:41.903428Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.919294Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.919660Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.922038Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-05-27T15:31:41.951635Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.967321Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.967670Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.969742Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0017] Task initiated on local node
[2026-05-27T15:31:41.999491Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.999706Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.999829Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.000064Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.000373Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.003801Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-27T15:31:42.005045Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-27T15:31:42.005739Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-27T15:31:42.033113Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.033181Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.033203Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.033395Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.033719Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.036079Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-27T15:31:42.036942Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-27T15:31:42.065548Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.065624Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.065801Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.068281Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-27T15:31:42.097642Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.662484Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-27T15:31:47.543149Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-27T15:31:47.543149Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] 
[2026-05-27T15:31:47.543149Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-27T15:31:47.543290Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] 
[2026-05-27T15:31:47.543315Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-27T15:31:47.543337Z] [nf-06971b8e7d6a87b5dedbeb720c192a2f-c216f-k82r9] [577_1] [WorkflowRunner] Elapsed time for full workflow: 10 sec