cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i HCC1395_BL.md.bam --interval xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz HCC1395_BL.table
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:119893964, elapsed 0.0s, est remaining 0.7s, peak mem 163MB, user 0.0s, sys 0.0s, output queue size 2073
progress 10% @chr2:20005744, elapsed 0.1s, est remaining 0.6s, peak mem 163MB, user 0.0s, sys 0.0s, output queue size 12108
progress 15% @chr2:189036616, elapsed 0.1s, est remaining 0.6s, peak mem 164MB, user 0.0s, sys 0.0s, output queue size 824
progress 20% @chr3:97871842, elapsed 0.1s, est remaining 0.5s, peak mem 164MB, user 0.0s, sys 0.0s, output queue size 11305
progress 25% @chr4:88393488, elapsed 0.2s, est remaining 0.5s, peak mem 166MB, user 0.0s, sys 0.0s, output queue size 21558
progress 30% @chr5:147323898, elapsed 0.2s, est remaining 0.5s, peak mem 173MB, user 0.0s, sys 0.0s, output queue size 31595
progress 35% @chr6:127119291, elapsed 0.2s, est remaining 0.4s, peak mem 173MB, user 0.0s, sys 0.0s, output queue size 41542
progress 40% @chr7:128815614, elapsed 0.3s, est remaining 0.4s, peak mem 173MB, user 0.0s, sys 0.0s, output queue size 51034
progress 45% @chr9:1975291, elapsed 0.3s, est remaining 0.4s, peak mem 290MB, user 0.0s, sys 0.0s, output queue size 60402
progress 50% @chr10:32543300, elapsed 0.3s, est remaining 0.3s, peak mem 302MB, user 0.0s, sys 0.0s, output queue size 70338
progress 55% @chr11:48139486, elapsed 0.4s, est remaining 0.3s, peak mem 302MB, user 0.0s, sys 0.0s, output queue size 80803
progress 60% @chr12:21848150, elapsed 0.4s, est remaining 0.3s, peak mem 302MB, user 0.0s, sys 0.0s, output queue size 90353
progress 65% @chr13:49220338, elapsed 0.4s, est remaining 0.2s, peak mem 308MB, user 0.0s, sys 0.0s, output queue size 10268
progress 70% @chr15:42684116, elapsed 0.5s, est remaining 0.2s, peak mem 308MB, user 0.0s, sys 0.0s, output queue size 20315
progress 75% @chr16:30733280, elapsed 0.5s, est remaining 0.2s, peak mem 308MB, user 0.0s, sys 0.0s, output queue size 29874
progress 80% @chr17:42543028, elapsed 0.5s, est remaining 0.1s, peak mem 308MB, user 0.0s, sys 0.0s, output queue size 40560
progress 85% @chr19:5648989, elapsed 0.6s, est remaining 0.1s, peak mem 344MB, user 0.0s, sys 0.0s, output queue size 50967
progress 90% @chr19:55731999, elapsed 0.6s, est remaining 0.1s, peak mem 344MB, user 0.0s, sys 0.0s, output queue size 60472
progress 95% @chr22:36929362, elapsed 0.9s, est remaining 0.0s, peak mem 2522MB, user 5.9s, sys 1.8s, output queue size 3227
progress 100% @chr6_GL000254v2_alt:3878686, elapsed 0.9s, est remaining 0.0s, peak mem 2522MB, user 6.0s, sys 1.8s, output queue size 7286
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
input file size: 51395357
reads: 1001089
contig: 201779 intervals 37922265 bases
advance: 208647 calls 1.711 user 0.073 sys 2.097 real
done: 1 calls 0.266 user 0.049 sys 0.320 real
execute: 1 calls 0.005 user 0.001 sys 0.944 real
fetch_reads: 208647 calls 0.024 user 0.000 sys 0.140 real
fetch_ref: 2042 calls 0.001 user 0.010 sys 0.019 real
fetch_vcf: 2042 calls 0.892 user 0.020 sys 0.934 real
idle: 92 calls 0.002 user 0.001 sys 31.539 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
update: 2207 calls 4.013 user 1.665 sys 6.031 real
overall: 2645196800 mem 9.147 user 14.899 sys 2.304 real
ls: cannot access '*.table.post': No such file or directory
ls: cannot access '*.recalibrated.bam': No such file or directory
ls: cannot access '*.recalibrated.bam.bai': No such file or directory
ls: cannot access '*.csv': No such file or directory
ls: cannot access '*.pdf': No such file or directory