File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1a/4b198a00debfdb9d61050ace518183/.command.err
Size
68.3 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_1;chr10_74133927-74134264.bed)
Attempt

Content

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[2026-05-27T15:31:37.367099Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-27T15:31:37.367825Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-27T15:31:37.367835Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-27T15:31:37.367839Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-27T15:31:37.367844Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXsMVuHw'
[2026-05-27T15:31:37.367847Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-27T15:31:37.367852Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-27T15:31:37.367856Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-27T15:31:37.367859Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-05-27T15:31:37.367863Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-27T15:31:37.367866Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-27T15:31:37.367870Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-27T15:31:37.367873Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-27T15:31:37.367877Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-27T15:31:37.368588Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-27T15:31:37.368702Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-27T15:31:37.374179Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-27T15:31:37.374779Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-27T15:31:37.375000Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-27T15:31:37.375247Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-27T15:31:37.375535Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T15:31:37.376285Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-05-27T15:31:37.376378Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-05-27T15:31:37.376451Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-05-27T15:31:37.376568Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-05-27T15:31:37.376915Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-05-27T15:31:37.377092Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T15:31:37.377275Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-05-27T15:31:37.377364Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-05-27T15:31:37.378120Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-05-27T15:31:37.378373Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-05-27T15:31:37.379844Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-05-27T15:31:37.380225Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-05-27T15:31:37.380459Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-27T15:31:37.380787Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-05-27T15:31:37.380863Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-05-27T15:31:37.380984Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-05-27T15:31:37.381051Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-05-27T15:31:37.381162Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-05-27T15:31:37.381224Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-05-27T15:31:37.381407Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-05-27T15:31:37.381474Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-05-27T15:31:37.381588Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-05-27T15:31:37.381657Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-05-27T15:31:37.381919Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-05-27T15:31:37.382142Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-05-27T15:31:37.382263Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-05-27T15:31:37.382326Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-05-27T15:31:37.382435Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-05-27T15:31:37.382500Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-05-27T15:31:37.382609Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-05-27T15:31:37.382686Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-05-27T15:31:37.382794Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-05-27T15:31:37.382857Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-05-27T15:31:37.382965Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-05-27T15:31:37.383028Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-05-27T15:31:37.383144Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-05-27T15:31:37.383291Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-05-27T15:31:37.383694Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-05-27T15:31:37.383756Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-05-27T15:31:37.383867Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-05-27T15:31:37.383927Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-05-27T15:31:37.384059Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-05-27T15:31:37.384131Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-05-27T15:31:37.384241Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-05-27T15:31:37.384307Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-05-27T15:31:37.384453Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-05-27T15:31:37.384563Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-05-27T15:31:37.384981Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-05-27T15:31:37.385319Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-05-27T15:31:37.385446Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-05-27T15:31:37.385510Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-05-27T15:31:37.385620Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-05-27T15:31:37.385683Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-05-27T15:31:37.385793Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-05-27T15:31:37.385856Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-05-27T15:31:37.385965Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-05-27T15:31:37.386029Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-05-27T15:31:37.386136Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-05-27T15:31:37.386199Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-05-27T15:31:37.386314Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-05-27T15:31:37.386519Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-05-27T15:31:37.387016Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-05-27T15:31:37.387085Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-05-27T15:31:37.387191Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-05-27T15:31:37.387257Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-05-27T15:31:37.387366Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-05-27T15:31:37.387428Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-05-27T15:31:37.387535Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-05-27T15:31:37.387600Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-05-27T15:31:37.387713Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-05-27T15:31:37.387810Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-05-27T15:31:37.387917Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-05-27T15:31:37.388077Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-05-27T15:31:37.406358Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-05-27T15:31:37.406734Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-05-27T15:31:37.406862Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:37.407066Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-27T15:31:37.407840Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-05-27T15:31:37.408027Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T15:31:37.408163Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T15:31:37.408528Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-05-27T15:31:37.408982Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T15:31:37.409240Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-05-27T15:31:37.409689Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T15:31:37.410050Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-05-27T15:31:37.411113Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-05-27T15:31:37.411479Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-27T15:31:37.412092Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T15:31:37.412724Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-05-27T15:31:37.413127Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-27T15:31:37.413557Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-05-27T15:31:37.415173Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-05-27T15:31:37.418905Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-05-27T15:31:37.424342Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-05-27T15:31:37.425287Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0002] Task initiated on local node
[2026-05-27T15:31:37.428606Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0011] Task initiated on local node
[2026-05-27T15:31:37.429100Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-05-27T15:31:37.434652Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-05-27T15:31:37.435546Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0010] Task initiated on local node
[2026-05-27T15:31:37.435724Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-05-27T15:31:37.499067Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:37.499117Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:37.499137Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:37.499751Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-05-27T15:31:37.500285Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-05-27T15:31:37.500911Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-05-27T15:31:37.503254Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:37.503614Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0000] Task initiated on local node
[2026-05-27T15:31:37.507503Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0011] Task initiated on local node
[2026-05-27T15:31:37.508341Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-05-27T15:31:37.510464Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0007] Task initiated on local node
[2026-05-27T15:31:37.511663Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0005] Task initiated on local node
[2026-05-27T15:31:37.873925Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:37.874736Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-05-27T15:31:37.877531Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-05-27T15:31:37.906725Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:37.907451Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-05-27T15:31:37.910207Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0006] Task initiated on local node
[2026-05-27T15:31:38.322483Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.323272Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.326135Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0002] Task initiated on local node
[2026-05-27T15:31:38.330978Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.331635Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.334419Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0009] Task initiated on local node
[2026-05-27T15:31:38.495745Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.496476Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.499326Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0004] Task initiated on local node
[2026-05-27T15:31:38.528428Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.529159Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.531781Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0007] Task initiated on local node
[2026-05-27T15:31:38.693465Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.694258Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.696933Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-05-27T15:31:38.726163Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.726856Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.728900Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0010] Task initiated on local node
[2026-05-27T15:31:38.758709Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.759401Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.761808Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0008] Task initiated on local node
[2026-05-27T15:31:38.823444Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.824173Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.827176Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0005] Task initiated on local node
[2026-05-27T15:31:38.856304Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.856995Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.859979Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0002] Task initiated on local node
[2026-05-27T15:31:38.889019Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.889711Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.892540Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0005] Task initiated on local node
[2026-05-27T15:31:39.304705Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.305527Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.308569Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0007] Task initiated on local node
[2026-05-27T15:31:39.337595Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.337660Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.338338Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.338687Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.341650Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0000] Task initiated on local node
[2026-05-27T15:31:39.342726Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-05-27T15:31:39.348038Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.348658Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.351299Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0010] Task initiated on local node
[2026-05-27T15:31:39.380852Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.380909Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.381492Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.381861Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.384731Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0004] Task initiated on local node
[2026-05-27T15:31:39.385555Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0009] Task initiated on local node
[2026-05-27T15:31:39.496337Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.496416Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.497053Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.497390Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.500658Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0002] Task initiated on local node
[2026-05-27T15:31:39.501472Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0009] Task initiated on local node
[2026-05-27T15:31:39.529617Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.530612Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.530843Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.532758Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.534147Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0007] Task initiated on local node
[2026-05-27T15:31:39.535388Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0011] Task initiated on local node
[2026-05-27T15:31:39.564867Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.564939Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.565605Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.566021Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.569057Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0001] Task initiated on local node
[2026-05-27T15:31:39.569881Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-05-27T15:31:39.598741Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.599360Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.602183Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-05-27T15:31:39.663513Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.664195Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.667503Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0000] Task initiated on local node
[2026-05-27T15:31:39.728594Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.729238Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.732070Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-05-27T15:31:39.745021Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.745627Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.748221Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0004] Task initiated on local node
[2026-05-27T15:31:39.777452Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.777993Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.780413Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0008] Task initiated on local node
[2026-05-27T15:31:39.781612Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.782096Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.784735Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0006] Task initiated on local node
[2026-05-27T15:31:39.813939Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.814490Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.817061Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-05-27T15:31:39.928610Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.929186Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.931457Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0009] Task initiated on local node
[2026-05-27T15:31:39.960976Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.961525Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.964014Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0003] Task initiated on local node
[2026-05-27T15:31:40.626794Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.627379Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.630035Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_009_chr10_0000] Task initiated on local node
[2026-05-27T15:31:40.659392Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.659959Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.662720Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0008] Task initiated on local node
[2026-05-27T15:31:40.675682Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.676218Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.678819Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-05-27T15:31:40.708018Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.708578Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.710324Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.710958Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0006] Task initiated on local node
[2026-05-27T15:31:40.711071Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.713412Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0003] Task initiated on local node
[2026-05-27T15:31:40.714566Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.715007Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.718000Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-05-27T15:31:40.746811Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.746875Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.747346Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.748096Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.750965Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-05-27T15:31:40.752054Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0003] Task initiated on local node
[2026-05-27T15:31:40.813619Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.814158Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.816502Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-05-27T15:31:40.817674Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.818119Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.820194Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0001] Task initiated on local node
[2026-05-27T15:31:40.849902Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.849973Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.850427Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.850808Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.853239Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-05-27T15:31:40.854060Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-05-27T15:31:40.883313Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.883370Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.883819Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.884117Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.886445Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0010] Task initiated on local node
[2026-05-27T15:31:40.887297Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-05-27T15:31:40.916068Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.916526Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.919202Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0011] Task initiated on local node
[2026-05-27T15:31:40.948367Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.948418Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.948811Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.949111Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.951453Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0005] Task initiated on local node
[2026-05-27T15:31:40.952132Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0006] Task initiated on local node
[2026-05-27T15:31:40.981343Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.981409Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.981834Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.982247Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.985222Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-05-27T15:31:40.985995Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0001] Task initiated on local node
[2026-05-27T15:31:41.046396Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.046848Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.049438Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-05-27T15:31:41.078653Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.079104Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.081610Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-05-27T15:31:41.110983Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.142875Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.143272Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.145804Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0004] Task initiated on local node
[2026-05-27T15:31:41.175212Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.389534Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.389923Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.392233Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0008] Task initiated on local node
[2026-05-27T15:31:41.405842Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.406239Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.408473Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0003] Task initiated on local node
[2026-05-27T15:31:41.421934Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.437626Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.601758Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.602133Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.604326Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0000] Task initiated on local node
[2026-05-27T15:31:41.634030Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.948362Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.948744Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.950801Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-05-27T15:31:41.980710Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.244981Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.245378Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.247791Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0001] Task initiated on local node
[2026-05-27T15:31:42.277387Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.541954Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.542311Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.544676Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-05-27T15:31:42.574188Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.574420Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.574534Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.574822Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.575129Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.578553Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-27T15:31:42.579926Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-27T15:31:42.581030Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-27T15:31:42.608069Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.608126Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.608149Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.608329Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.608918Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.611162Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-27T15:31:42.612136Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-27T15:31:42.641313Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.641368Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.641536Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.643751Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-27T15:31:42.673333Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.087880Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-27T15:31:47.912344Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-27T15:31:47.912344Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] 
[2026-05-27T15:31:47.912344Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-27T15:31:47.912379Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] 
[2026-05-27T15:31:47.912388Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-27T15:31:47.912395Z] [nf-1a4b198a00debfdb9d61050ace518183-25aae-6rnnz] [567_1] [WorkflowRunner] Elapsed time for full workflow: 10 sec