cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta -t 12 --interval chr1_69091-70008.bed.gz -i HCC1395_BL.recalibrated.bam --algo Haplotyper -d dbsnp_146.hg38.vcf.gz --emit_mode variant germline_control_1.haplotyper.chr1_69091-70008.bed.unfiltered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:18630847, elapsed 0.0s, est remaining 0.7s, peak mem 78MB, user 0.0s, sys 0.1s, output queue size 892
progress 10% @chr1:37761367, elapsed 0.1s, est remaining 0.7s, peak mem 78MB, user 0.0s, sys 0.3s, output queue size 3541
progress 15% @chr1:65425303, elapsed 0.1s, est remaining 0.7s, peak mem 99MB, user 0.1s, sys 0.4s, output queue size 6275
progress 20% @chr1:113834910, elapsed 0.2s, est remaining 0.6s, peak mem 111MB, user 0.1s, sys 0.6s, output queue size 9030
progress 25% @chr1:155248405, elapsed 0.2s, est remaining 0.6s, peak mem 117MB, user 0.2s, sys 0.8s, output queue size 11372
progress 30% @chr1:179102287, elapsed 0.2s, est remaining 0.6s, peak mem 138MB, user 0.2s, sys 0.9s, output queue size 13847
progress 35% @chr1:209789667, elapsed 0.3s, est remaining 0.5s, peak mem 144MB, user 0.2s, sys 1.0s, output queue size 16278
progress 40% @chr1:246931308, elapsed 0.3s, est remaining 0.5s, peak mem 159MB, user 0.3s, sys 1.1s, output queue size 18680
progress 45% @chr2:32593915, elapsed 0.3s, est remaining 0.4s, peak mem 165MB, user 0.3s, sys 1.3s, output queue size 20972
progress 50% @chr2:74460221, elapsed 0.4s, est remaining 0.4s, peak mem 168MB, user 0.3s, sys 1.5s, output queue size 23457
progress 55% @chr2:113742677, elapsed 0.4s, est remaining 0.4s, peak mem 180MB, user 0.3s, sys 1.7s, output queue size 26008
progress 60% @chr2:170954650, elapsed 0.5s, est remaining 0.3s, peak mem 198MB, user 0.4s, sys 1.9s, output queue size 28685
progress 65% @chr2:202759233, elapsed 0.5s, est remaining 0.3s, peak mem 207MB, user 0.4s, sys 2.0s, output queue size 30955
progress 70% @chr2:233796200, elapsed 0.5s, est remaining 0.2s, peak mem 210MB, user 0.5s, sys 2.2s, output queue size 33442
progress 75% @chr3:25623515, elapsed 0.6s, est remaining 0.2s, peak mem 225MB, user 0.5s, sys 2.3s, output queue size 35660
progress 80% @chr3:49804181, elapsed 0.6s, est remaining 0.2s, peak mem 237MB, user 0.5s, sys 2.4s, output queue size 38136
progress 85% @chr3:101859272, elapsed 0.7s, est remaining 0.1s, peak mem 246MB, user 0.6s, sys 2.6s, output queue size 40769
progress 90% @chr3:140448519, elapsed 0.7s, est remaining 0.1s, peak mem 255MB, user 0.6s, sys 2.8s, output queue size 43373
progress 95% @chr3:187741772, elapsed 0.8s, est remaining 0.0s, peak mem 276MB, user 0.7s, sys 3.0s, output queue size 833
progress 100% @chr4:30721423, elapsed 0.8s, est remaining 0.0s, peak mem 282MB, user 0.7s, sys 3.1s, output queue size 3069
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 12 max 384
algo: Haplotyper
license: sentieon:Haplotyper=12
input file size: 71692772
output file size: 22306
reads: 1001089
contig: 49651 intervals 9000373 bases
active: 100735 calls 0.017 user 0.003 sys 0.018 real
advance: 51084 calls 0.009 user 0.001 sys 0.022 real
calc: 100735 calls 0.002 user 0.009 sys 0.018 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
execute: 1 calls 0.005 user 0.001 sys 1.594 real
fetch: 100735 calls 0.009 user 0.000 sys 0.019 real
fetch_ref: 100735 calls 0.122 user 0.085 sys 0.412 real
idle: 39 calls 0.013 user 0.053 sys 22.121 real
init: 1 calls 0.033 user 0.010 sys 0.043 real
region: 100735 calls 0.000 user 0.004 sys 0.021 real
tracker: 100735 calls 0.036 user 0.006 sys 0.088 real
overall: 295833600 mem 1.269 user 5.192 sys 2.714 real
ls: cannot access '*.g.vcf.gz': No such file or directory
ls: cannot access '*.g.vcf.gz.tbi': No such file or directory