File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/aa/5d0c2c6c3f5bbcef13bdf118aa89d7/.command.err
Size
63.3 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_2;chr1_68991-70108.bed)
Attempt

Content

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[2026-05-27T15:31:36.690475Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-27T15:31:36.692663Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-27T15:31:36.692673Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-27T15:31:36.692678Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-27T15:31:36.692681Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXPXtyZy'
[2026-05-27T15:31:36.692685Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-27T15:31:36.692690Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-27T15:31:36.692693Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-27T15:31:36.692697Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-05-27T15:31:36.692700Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-27T15:31:36.692704Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-27T15:31:36.692707Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-27T15:31:36.692711Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-27T15:31:36.692714Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-27T15:31:36.693367Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-27T15:31:36.693488Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-27T15:31:36.699159Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-27T15:31:36.699892Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-27T15:31:36.700071Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-27T15:31:36.700351Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-27T15:31:36.700618Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.700961Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.701050Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.701120Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.701237Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.701302Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.701418Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.701478Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.701609Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.701687Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.701966Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.702266Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.702427Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T15:31:36.702599Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.702853Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.703411Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.704660Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.705495Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.705708Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-27T15:31:36.705770Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.706021Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.706145Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.706426Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.706662Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.707065Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.707324Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.707447Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.707516Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.707638Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.707705Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.707816Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.707883Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.708009Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.708075Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.708187Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.708254Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.708405Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.708627Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.709049Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.709138Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.709252Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.709315Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.709430Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.709493Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.709965Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.710058Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.710740Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.710833Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.711008Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.711073Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.711181Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.711244Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.711355Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.711415Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.711522Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.711584Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.711695Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.711760Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.711872Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.712027Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.712504Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.712565Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.712674Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.712735Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.712842Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.712908Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.713015Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.713075Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.729262Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.729777Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:36.730521Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.730730Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-05-27T15:31:36.730817Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.731211Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.731401Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.731532Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-05-27T15:31:36.732711Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.733087Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.733467Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-05-27T15:31:36.734105Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.734684Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-05-27T15:31:36.735114Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T15:31:36.735640Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-05-27T15:31:36.735875Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-27T15:31:36.736975Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-05-27T15:31:36.738355Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-05-27T15:31:36.739498Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-05-27T15:31:36.741859Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0009] Task initiated on local node
[2026-05-27T15:31:36.744374Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0003] Task initiated on local node
[2026-05-27T15:31:36.748453Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-05-27T15:31:36.752283Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0000] Task initiated on local node
[2026-05-27T15:31:36.753310Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0014] Task initiated on local node
[2026-05-27T15:31:36.757173Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-05-27T15:31:36.758020Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-05-27T15:31:36.758336Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0011] Task initiated on local node
[2026-05-27T15:31:36.822258Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:36.822922Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-05-27T15:31:36.825476Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-05-27T15:31:37.338429Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:37.339314Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-05-27T15:31:37.342262Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0019] Task initiated on local node
[2026-05-27T15:31:37.503614Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:37.503722Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:37.504471Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-05-27T15:31:37.504819Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-05-27T15:31:37.507723Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-05-27T15:31:37.508885Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-05-27T15:31:37.568861Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:37.568956Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:37.569680Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-05-27T15:31:37.569994Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-05-27T15:31:37.572694Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-05-27T15:31:37.573679Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-05-27T15:31:37.634482Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:37.635261Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-05-27T15:31:37.637992Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0017] Task initiated on local node
[2026-05-27T15:31:37.949928Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:37.950677Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-05-27T15:31:37.953379Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-05-27T15:31:38.014624Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.015377Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.017955Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0016] Task initiated on local node
[2026-05-27T15:31:38.430220Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.430929Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.433749Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-05-27T15:31:38.495019Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.495090Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.495122Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.495804Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.496124Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.496469Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.499776Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-05-27T15:31:38.500220Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0009] Task initiated on local node
[2026-05-27T15:31:38.527201Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-05-27T15:31:38.528568Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.528669Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.528704Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.529337Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.529613Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.529918Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.532967Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_000_chr1_0000] Task initiated on local node
[2026-05-27T15:31:38.534368Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-05-27T15:31:38.535037Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0014] Task initiated on local node
[2026-05-27T15:31:38.562466Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.563092Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.565818Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0011] Task initiated on local node
[2026-05-27T15:31:38.578898Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.579533Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.582219Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-05-27T15:31:38.595429Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.595498Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.596045Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.596273Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.599739Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0008] Task initiated on local node
[2026-05-27T15:31:38.862351Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.863119Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.865793Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0016] Task initiated on local node
[2026-05-27T15:31:38.870836Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.871450Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.874322Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0005] Task initiated on local node
[2026-05-27T15:31:38.903293Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.903966Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-05-27T15:31:38.906875Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0013] Task initiated on local node
[2026-05-27T15:31:39.068429Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.069176Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.071966Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-05-27T15:31:39.101216Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.101915Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.104709Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0000] Task initiated on local node
[2026-05-27T15:31:39.165977Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.166668Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.169288Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0006] Task initiated on local node
[2026-05-27T15:31:39.230795Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.231488Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.234206Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0019] Task initiated on local node
[2026-05-27T15:31:39.263381Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.264023Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.266869Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0020] Task initiated on local node
[2026-05-27T15:31:39.485024Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0002] Task initiated on local node
[2026-05-27T15:31:39.528719Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.529359Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.532258Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0012] Task initiated on local node
[2026-05-27T15:31:39.643717Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.644359Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.647429Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0015] Task initiated on local node
[2026-05-27T15:31:40.009192Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.009907Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.012871Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0006] Task initiated on local node
[2026-05-27T15:31:40.042215Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.042805Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.045429Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0007] Task initiated on local node
[2026-05-27T15:31:40.156836Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.157453Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.160067Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-05-27T15:31:40.189239Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.189863Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.192289Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0018] Task initiated on local node
[2026-05-27T15:31:40.354183Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.354778Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.357330Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0005] Task initiated on local node
[2026-05-27T15:31:40.386719Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.387288Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.389938Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0001] Task initiated on local node
[2026-05-27T15:31:40.601795Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.602428Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.604860Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0002] Task initiated on local node
[2026-05-27T15:31:40.634505Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.635048Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.637614Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-05-27T15:31:40.666866Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.667355Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.670245Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0003] Task initiated on local node
[2026-05-27T15:31:40.699285Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.699818Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.702325Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-05-27T15:31:40.703518Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.703988Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.706356Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0020] Task initiated on local node
[2026-05-27T15:31:40.735833Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.735912Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.736376Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.736620Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.739579Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-05-27T15:31:40.740712Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-05-27T15:31:40.744497Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.744972Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.747455Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0013] Task initiated on local node
[2026-05-27T15:31:40.776895Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.776965Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.777413Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.777682Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.780383Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0017] Task initiated on local node
[2026-05-27T15:31:40.780869Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-05-27T15:31:40.793527Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.794036Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.796554Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-05-27T15:31:40.825842Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.825915Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.826331Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.826701Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.829331Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0008] Task initiated on local node
[2026-05-27T15:31:40.829872Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-05-27T15:31:40.858564Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.858658Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.859079Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.859322Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.862156Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0010] Task initiated on local node
[2026-05-27T15:31:40.863255Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0004] Task initiated on local node
[2026-05-27T15:31:40.923828Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.924331Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.927104Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0012] Task initiated on local node
[2026-05-27T15:31:40.988389Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.988478Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.988991Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.991797Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0015] Task initiated on local node
[2026-05-27T15:31:41.053114Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.267665Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.268149Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.271033Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0010] Task initiated on local node
[2026-05-27T15:31:41.332121Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.332206Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.332639Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.335562Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0018] Task initiated on local node
[2026-05-27T15:31:41.364438Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.478646Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.479090Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.481669Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0007] Task initiated on local node
[2026-05-27T15:31:41.510880Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.026314Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.026740Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.029210Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-05-27T15:31:42.058644Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.222876Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.223275Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.225859Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0001] Task initiated on local node
[2026-05-27T15:31:42.226959Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.227280Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.229455Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0004] Task initiated on local node
[2026-05-27T15:31:42.259016Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.259079Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.259275Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.259389Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.259622Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.259894Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.263541Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-27T15:31:42.264988Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-27T15:31:42.266012Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-27T15:31:42.293168Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.293232Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.293252Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.293436Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.293837Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.296233Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-27T15:31:42.297139Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-27T15:31:42.325661Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.325719Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.325875Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.328024Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-27T15:31:42.357918Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.361201Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-27T15:31:47.237594Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-27T15:31:47.237594Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] 
[2026-05-27T15:31:47.237594Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-27T15:31:47.237649Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] 
[2026-05-27T15:31:47.237655Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-27T15:31:47.237661Z] [nf-aa5d0c2c6c3f5bbcef13bdf118aa89d7-b0461-b2jsf] [564_1] [WorkflowRunner] Elapsed time for full workflow: 10 sec