Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2d/9616f5dc0166b4eef77805b527cd42/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/98/a4798a32f5e9daf45b045790a1d26d/HCC1395_BL.recalibrated.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/98/a4798a32f5e9daf45b045790a1d26d/HCC1395_BL.recalibrated.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2d/9616f5dc0166b4eef77805b527cd42/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr1_68991-70108.bed.gz
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr1_68991-70108.bed.gz.tbi
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-05-27T15:31:39.339654Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-27T15:31:39.340533Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-27T15:31:39.340543Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-27T15:31:39.340547Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-27T15:31:39.340551Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXlIKJ8J'
[2026-05-27T15:31:39.340555Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-27T15:31:39.340560Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-27T15:31:39.340563Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-27T15:31:39.340567Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-05-27T15:31:39.340570Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-27T15:31:39.340574Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-27T15:31:39.340578Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-27T15:31:39.340581Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-27T15:31:39.340585Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-27T15:31:39.341170Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-27T15:31:39.341278Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-27T15:31:39.346953Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-27T15:31:39.347533Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-27T15:31:39.347707Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-27T15:31:39.347902Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-27T15:31:39.348167Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.348466Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.348578Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.348696Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.348838Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.348912Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.349038Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.349107Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.349230Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.349397Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.349803Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.349962Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.350057Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.350603Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.351021Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.352746Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.352964Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-27T15:31:39.353219Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.353356Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.353426Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.353635Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.353703Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.353816Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.353886Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.354022Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.354096Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.354233Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.354366Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.354545Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.354855Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.355132Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.355415Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.355631Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.355924Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.356228Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.356507Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.356805Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.357100Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.357224Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.357289Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.357404Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.357471Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.357584Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.357650Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.358201Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.358561Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.358714Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.358887Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.359007Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.359074Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.359185Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.359250Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.359361Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.359425Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.359534Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.359653Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.359915Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.360441Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.360887Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.360958Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.361067Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.361200Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.361317Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.361380Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.361487Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.361557Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.361668Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.361729Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.378075Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.378554Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.378762Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.378877Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.379137Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.379805Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.379932Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.381741Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.381888Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.382254Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.382856Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.383579Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.383948Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.384530Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T15:31:39.384845Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.385237Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-27T15:31:39.387568Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.387992Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0004] Task initiated on local node
[2026-05-27T15:31:39.388839Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.390018Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.393561Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0014] Task initiated on local node
[2026-05-27T15:31:39.397113Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0012] Task initiated on local node
[2026-05-27T15:31:39.400155Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-05-27T15:31:39.403089Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-05-27T15:31:39.403990Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0006] Task initiated on local node
[2026-05-27T15:31:39.406161Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-05-27T15:31:39.408426Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-05-27T15:31:39.470337Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.470403Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.471114Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.471394Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-05-27T15:31:39.475410Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0018] Task initiated on local node
[2026-05-27T15:31:40.288456Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.289363Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.292384Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0009] Task initiated on local node
[2026-05-27T15:31:40.353618Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.354439Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.357290Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-05-27T15:31:40.386498Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.387293Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.390151Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0003] Task initiated on local node
[2026-05-27T15:31:40.837984Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-05-27T15:31:40.852412Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.852501Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.852528Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.853241Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.853592Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.854042Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-05-27T15:31:40.856384Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0019] Task initiated on local node
[2026-05-27T15:31:40.858989Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0015] Task initiated on local node
[2026-05-27T15:31:40.859966Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-05-27T15:31:41.019535Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.020342Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.023172Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-05-27T15:31:41.052508Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.053267Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.056299Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-05-27T15:31:41.167637Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.168464Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.171163Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0012] Task initiated on local node
[2026-05-27T15:31:41.200758Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.201541Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.204295Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-05-27T15:31:41.217336Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.218110Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.220961Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0014] Task initiated on local node
[2026-05-27T15:31:41.250168Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.250956Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.253859Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0011] Task initiated on local node
[2026-05-27T15:31:41.315117Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.315891Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.318591Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0011] Task initiated on local node
[2026-05-27T15:31:41.380034Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.380789Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.383668Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0018] Task initiated on local node
[2026-05-27T15:31:41.412995Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.413755Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.416635Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0016] Task initiated on local node
[2026-05-27T15:31:41.929204Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.930009Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.933228Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-05-27T15:31:41.962368Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.963106Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.965942Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-05-27T15:31:41.995040Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.995751Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-05-27T15:31:41.998509Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0006] Task initiated on local node
[2026-05-27T15:31:42.059875Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.060598Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.063667Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-05-27T15:31:42.274974Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.275057Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.275638Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.276074Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.279552Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0020] Task initiated on local node
[2026-05-27T15:31:42.280320Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0008] Task initiated on local node
[2026-05-27T15:31:42.441060Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.441763Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.444639Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0017] Task initiated on local node
[2026-05-27T15:31:42.505991Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.506777Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.509653Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0001] Task initiated on local node
[2026-05-27T15:31:42.538786Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.539423Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.541981Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0004] Task initiated on local node
[2026-05-27T15:31:42.571334Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.571926Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.574742Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-05-27T15:31:42.636145Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.636778Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.639624Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-05-27T15:31:42.700894Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.701524Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.704065Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0016] Task initiated on local node
[2026-05-27T15:31:42.733293Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.733883Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.736450Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-05-27T15:31:42.765659Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.766249Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.769280Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-05-27T15:31:42.798065Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.798240Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.798990Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.799215Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.799464Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.802361Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.802607Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0009] Task initiated on local node
[2026-05-27T15:31:42.805031Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0007] Task initiated on local node
[2026-05-27T15:31:42.806046Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0000] Task initiated on local node
[2026-05-27T15:31:42.835254Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.835838Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-05-27T15:31:42.838285Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0002] Task initiated on local node
[2026-05-27T15:31:43.200426Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.201054Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.204367Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-05-27T15:31:43.265561Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.266153Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.269005Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-05-27T15:31:43.298300Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.298937Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.301699Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0005] Task initiated on local node
[2026-05-27T15:31:43.463287Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.463865Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.466867Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-05-27T15:31:43.495800Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.496368Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.498796Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0019] Task initiated on local node
[2026-05-27T15:31:43.528485Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.529087Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.531619Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-05-27T15:31:43.561355Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.561867Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.564492Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-05-27T15:31:43.593889Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.594435Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.597171Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0013] Task initiated on local node
[2026-05-27T15:31:43.859151Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.859758Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-05-27T15:31:43.862709Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0010] Task initiated on local node
[2026-05-27T15:31:44.224867Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.225426Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.228138Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0010] Task initiated on local node
[2026-05-27T15:31:44.257474Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.257997Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.260342Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0003] Task initiated on local node
[2026-05-27T15:31:44.289873Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.290380Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.292891Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0015] Task initiated on local node
[2026-05-27T15:31:44.322438Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.322517Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.322958Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.323251Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.325760Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0007] Task initiated on local node
[2026-05-27T15:31:44.326433Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0008] Task initiated on local node
[2026-05-27T15:31:44.355414Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.355475Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.355504Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.355866Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.356147Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.356515Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.359161Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0020] Task initiated on local node
[2026-05-27T15:31:44.360619Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0017] Task initiated on local node
[2026-05-27T15:31:44.361613Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-05-27T15:31:44.388816Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.388878Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.420778Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.421176Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.423604Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-05-27T15:31:44.453120Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.567147Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.567216Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.567568Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.567816Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.570291Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_000_chr1_0000] Task initiated on local node
[2026-05-27T15:31:44.571223Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0001] Task initiated on local node
[2026-05-27T15:31:44.600520Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.616457Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.616845Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.619056Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0000] Task initiated on local node
[2026-05-27T15:31:44.648779Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.863173Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.863593Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.866291Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0005] Task initiated on local node
[2026-05-27T15:31:44.895571Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.911318Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.911717Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-05-27T15:31:44.913953Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0002] Task initiated on local node
[2026-05-27T15:31:44.943621Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:45.458871Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:45.459288Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-05-27T15:31:45.461259Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0013] Task initiated on local node
[2026-05-27T15:31:45.491054Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:45.491275Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:45.491386Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-27T15:31:45.491671Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T15:31:45.492065Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T15:31:45.495526Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-27T15:31:45.496598Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-27T15:31:45.497645Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-27T15:31:45.524094Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:45.524155Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:45.524177Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:45.524362Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T15:31:45.524896Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T15:31:45.527118Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-27T15:31:45.528066Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-27T15:31:45.557455Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:45.557515Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:45.557684Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T15:31:45.559866Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-27T15:31:45.589607Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T15:31:49.963352Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-27T15:31:58.228869Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-27T15:31:58.228869Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] 
[2026-05-27T15:31:58.228869Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-27T15:31:58.228927Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] 
[2026-05-27T15:31:58.228934Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-27T15:31:58.228940Z] [nf-2d9616f5dc0166b4eef77805b527cd42-6665d-94fkf] [568_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec