cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta -t 12 --interval chr1_69091-70008.bed.gz -i Sig_18_Blood.recalibrated.bam --algo Haplotyper -d dbsnp_146.hg38.vcf.gz --emit_mode variant germline_control_2.haplotyper.chr1_69091-70008.bed.unfiltered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:18630847, elapsed 0.0s, est remaining 0.7s, peak mem 87MB, user 0.0s, sys 0.1s, output queue size 2233
progress 10% @chr1:37752876, elapsed 0.1s, est remaining 0.7s, peak mem 97MB, user 0.0s, sys 0.3s, output queue size 4885
progress 15% @chr1:65405870, elapsed 0.1s, est remaining 0.7s, peak mem 109MB, user 0.1s, sys 0.4s, output queue size 1116
progress 20% @chr1:113837590, elapsed 0.2s, est remaining 0.7s, peak mem 120MB, user 0.1s, sys 0.6s, output queue size 3877
progress 25% @chr1:155320409, elapsed 0.2s, est remaining 0.6s, peak mem 132MB, user 0.2s, sys 0.7s, output queue size 6280
progress 30% @chr1:179102287, elapsed 0.2s, est remaining 0.6s, peak mem 138MB, user 0.2s, sys 0.8s, output queue size 8695
progress 35% @chr1:210404464, elapsed 0.3s, est remaining 0.5s, peak mem 150MB, user 0.3s, sys 1.0s, output queue size 11156
progress 40% @chr1:246986967, elapsed 0.3s, est remaining 0.5s, peak mem 160MB, user 0.3s, sys 1.2s, output queue size 13528
progress 45% @chr2:32549313, elapsed 0.4s, est remaining 0.4s, peak mem 172MB, user 0.3s, sys 1.4s, output queue size 15814
progress 50% @chr2:74461275, elapsed 0.4s, est remaining 0.4s, peak mem 183MB, user 0.4s, sys 1.5s, output queue size 18305
progress 55% @chr2:113499257, elapsed 0.4s, est remaining 0.4s, peak mem 189MB, user 0.4s, sys 1.7s, output queue size 20836
progress 60% @chr2:170993780, elapsed 0.5s, est remaining 0.3s, peak mem 202MB, user 0.4s, sys 1.8s, output queue size 23532
progress 65% @chr2:202759233, elapsed 0.5s, est remaining 0.3s, peak mem 211MB, user 0.4s, sys 2.0s, output queue size 25802
progress 70% @chr2:233772261, elapsed 0.6s, est remaining 0.2s, peak mem 222MB, user 0.5s, sys 2.1s, output queue size 28283
progress 75% @chr3:25619862, elapsed 0.6s, est remaining 0.2s, peak mem 231MB, user 0.5s, sys 2.3s, output queue size 30505
progress 80% @chr3:49804181, elapsed 0.6s, est remaining 0.2s, peak mem 243MB, user 0.6s, sys 2.4s, output queue size 32977
progress 85% @chr3:101859272, elapsed 0.7s, est remaining 0.1s, peak mem 255MB, user 0.6s, sys 2.7s, output queue size 35616
progress 90% @chr3:140532324, elapsed 0.7s, est remaining 0.1s, peak mem 267MB, user 0.6s, sys 2.9s, output queue size 38222
progress 95% @chr3:188239635, elapsed 0.8s, est remaining 0.0s, peak mem 277MB, user 0.7s, sys 3.0s, output queue size 40620
progress 100% @chr4:30721423, elapsed 0.8s, est remaining 0.0s, peak mem 286MB, user 0.7s, sys 3.1s, output queue size 42856
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 12 max 192
algo: Haplotyper
license: sentieon:Haplotyper=12
input file size: 74586807
output file size: 22307
reads: 1001133
contig: 49651 intervals 9000373 bases
active: 100735 calls 0.007 user 0.008 sys 0.019 real
advance: 51084 calls 0.010 user 0.016 sys 0.021 real
calc: 100735 calls 0.010 user 0.000 sys 0.019 real
done: 1 calls 0.001 user 0.000 sys 0.002 real
execute: 1 calls 0.005 user 0.002 sys 1.424 real
fetch: 100735 calls 0.001 user 0.026 sys 0.019 real
fetch_ref: 100735 calls 0.079 user 0.071 sys 0.384 real
idle: 39 calls 0.008 user 0.047 sys 19.939 real
init: 1 calls 0.038 user 0.002 sys 0.042 real
region: 100735 calls 0.000 user 0.017 sys 0.022 real
tracker: 100735 calls 0.037 user 0.004 sys 0.091 real
overall: 302231552 mem 1.318 user 5.006 sys 2.541 real
ls: cannot access '*.g.vcf.gz': No such file or directory
ls: cannot access '*.g.vcf.gz.tbi': No such file or directory