cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i HCC1395_tumor.md.bam --interval xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz HCC1395_tumor.table
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:119893964, elapsed 0.0s, est remaining 0.8s, peak mem 163MB, user 0.0s, sys 0.0s, output queue size 492
progress 10% @chr2:20003161, elapsed 0.1s, est remaining 0.7s, peak mem 163MB, user 0.0s, sys 0.0s, output queue size 4182
progress 15% @chr2:189043151, elapsed 0.1s, est remaining 0.7s, peak mem 163MB, user 0.0s, sys 0.0s, output queue size 14573
progress 20% @chr3:97871842, elapsed 0.2s, est remaining 0.6s, peak mem 163MB, user 0.0s, sys 0.0s, output queue size 25042
progress 25% @chr4:88442234, elapsed 0.2s, est remaining 0.6s, peak mem 167MB, user 0.0s, sys 0.0s, output queue size 9812
progress 30% @chr5:146514854, elapsed 0.2s, est remaining 0.6s, peak mem 173MB, user 0.0s, sys 0.0s, output queue size 19853
progress 35% @chr6:125998550, elapsed 0.3s, est remaining 0.5s, peak mem 173MB, user 0.0s, sys 0.0s, output queue size 29802
progress 40% @chr7:128807360, elapsed 0.3s, est remaining 0.5s, peak mem 173MB, user 0.0s, sys 0.0s, output queue size 39283
progress 45% @chr9:2039466, elapsed 0.3s, est remaining 0.4s, peak mem 341MB, user 0.0s, sys 0.0s, output queue size 48658
progress 50% @chr10:32055848, elapsed 0.4s, est remaining 0.4s, peak mem 344MB, user 0.0s, sys 0.0s, output queue size 58594
progress 55% @chr11:48245104, elapsed 0.4s, est remaining 0.3s, peak mem 344MB, user 0.0s, sys 0.0s, output queue size 69058
progress 60% @chr12:21933782, elapsed 0.5s, est remaining 0.3s, peak mem 352MB, user 0.0s, sys 0.0s, output queue size 78608
progress 65% @chr13:49203157, elapsed 0.5s, est remaining 0.3s, peak mem 353MB, user 0.0s, sys 0.0s, output queue size 89661
progress 70% @chr15:42684116, elapsed 0.6s, est remaining 0.2s, peak mem 368MB, user 0.0s, sys 0.0s, output queue size 3325
progress 75% @chr16:30768838, elapsed 0.6s, est remaining 0.2s, peak mem 368MB, user 0.0s, sys 0.0s, output queue size 12894
progress 80% @chr17:42513861, elapsed 0.6s, est remaining 0.2s, peak mem 368MB, user 0.0s, sys 0.0s, output queue size 23581
progress 85% @chr19:5649926, elapsed 0.7s, est remaining 0.1s, peak mem 415MB, user 0.0s, sys 0.0s, output queue size 34000
progress 90% @chr19:55597572, elapsed 0.7s, est remaining 0.1s, peak mem 415MB, user 0.0s, sys 0.0s, output queue size 43490
progress 95% @chr22:37011027, elapsed 1.0s, est remaining 0.1s, peak mem 2519MB, user 5.7s, sys 2.1s, output queue size 3227
progress 100% @chr6_GL000251v2_alt:3935152, elapsed 1.1s, est remaining 0.0s, peak mem 2519MB, user 5.8s, sys 2.1s, output queue size 5587
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
input file size: 50813908
reads: 1001320
contig: 201779 intervals 37922265 bases
advance: 208647 calls 1.774 user 0.109 sys 2.103 real
done: 1 calls 0.220 user 0.110 sys 0.338 real
execute: 1 calls 0.007 user 0.002 sys 1.057 real
fetch_reads: 208647 calls 0.070 user 0.000 sys 0.157 real
fetch_ref: 2048 calls 0.003 user 0.018 sys 0.025 real
fetch_vcf: 2048 calls 0.764 user 0.025 sys 0.914 real
idle: 92 calls 0.003 user 0.001 sys 31.619 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
update: 2195 calls 3.808 user 1.920 sys 6.325 real
overall: 2642382848 mem 10.023 user 7.763 sys 2.423 real
ls: cannot access '*.table.post': No such file or directory
ls: cannot access '*.recalibrated.bam': No such file or directory
ls: cannot access '*.recalibrated.bam.bai': No such file or directory
ls: cannot access '*.csv': No such file or directory
ls: cannot access '*.pdf': No such file or directory