cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta -t 12 --interval chr14_64122012-64122133.bed.gz -i HCC1395_BL.recalibrated.bam --algo Haplotyper -d dbsnp_146.hg38.vcf.gz --emit_mode variant germline_control_1.haplotyper.chr14_64122012-64122133.bed.unfiltered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr14:100880712, elapsed 0.0s, est remaining 0.7s, peak mem 84MB, user 0.0s, sys 0.1s, output queue size 1815
progress 10% @chr15:40899144, elapsed 0.1s, est remaining 0.6s, peak mem 94MB, user 0.0s, sys 0.2s, output queue size 4054
progress 15% @chr15:63774694, elapsed 0.1s, est remaining 0.6s, peak mem 105MB, user 0.1s, sys 0.4s, output queue size 6676
progress 20% @chr15:87989891, elapsed 0.1s, est remaining 0.5s, peak mem 114MB, user 0.1s, sys 0.5s, output queue size 8967
progress 25% @chr16:1941257, elapsed 0.2s, est remaining 0.5s, peak mem 120MB, user 0.1s, sys 0.6s, output queue size 10647
progress 30% @chr16:23524371, elapsed 0.2s, est remaining 0.5s, peak mem 132MB, user 0.1s, sys 0.7s, output queue size 13129
progress 35% @chr16:66565886, elapsed 0.2s, est remaining 0.4s, peak mem 142MB, user 0.2s, sys 0.9s, output queue size 732
progress 40% @chr16:89286670, elapsed 0.3s, est remaining 0.4s, peak mem 148MB, user 0.2s, sys 1.0s, output queue size 3207
progress 45% @chr17:10303394, elapsed 0.3s, est remaining 0.4s, peak mem 165MB, user 0.3s, sys 1.2s, output queue size 5818
progress 50% @chr17:36328061, elapsed 0.4s, est remaining 0.4s, peak mem 172MB, user 0.3s, sys 1.3s, output queue size 8416
progress 55% @chr17:45113122, elapsed 0.4s, est remaining 0.3s, peak mem 183MB, user 0.3s, sys 1.5s, output queue size 10657
progress 60% @chr17:68347125, elapsed 0.4s, est remaining 0.3s, peak mem 192MB, user 0.4s, sys 1.6s, output queue size 13190
progress 65% @chr18:5890198, elapsed 0.5s, est remaining 0.3s, peak mem 204MB, user 0.4s, sys 1.8s, output queue size 15910
progress 70% @chr18:62574057, elapsed 0.5s, est remaining 0.2s, peak mem 213MB, user 0.4s, sys 2.0s, output queue size 18288
progress 75% @chr19:6926366, elapsed 0.5s, est remaining 0.2s, peak mem 225MB, user 0.5s, sys 2.1s, output queue size 20677
progress 80% @chr19:15331837, elapsed 0.6s, est remaining 0.1s, peak mem 231MB, user 0.5s, sys 2.2s, output queue size 22939
progress 85% @chr19:36891492, elapsed 0.6s, est remaining 0.1s, peak mem 246MB, user 0.5s, sys 2.4s, output queue size 25248
progress 90% @chr19:46469733, elapsed 0.6s, est remaining 0.1s, peak mem 255MB, user 0.5s, sys 2.5s, output queue size 27420
progress 95% @chr20:36927133, elapsed 0.7s, est remaining 0.0s, peak mem 265MB, user 0.6s, sys 2.7s, output queue size 30060
progress 100% @chr20:57373663, elapsed 0.7s, est remaining 0.0s, peak mem 271MB, user 0.6s, sys 2.8s, output queue size 32496
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 12 max 192
algo: Haplotyper
license: sentieon:Haplotyper=12
input file size: 71692772
output file size: 22308
reads: 1001089
contig: 48152 intervals 9000028 bases
active: 97912 calls 0.003 user 0.000 sys 0.018 real
advance: 49760 calls 0.002 user 0.011 sys 0.021 real
calc: 97912 calls 0.001 user 0.000 sys 0.018 real
done: 1 calls 0.001 user 0.000 sys 0.002 real
execute: 1 calls 0.002 user 0.010 sys 1.319 real
fetch: 97912 calls 0.000 user 0.010 sys 0.019 real
fetch_ref: 97912 calls 0.120 user 0.060 sys 0.349 real
idle: 39 calls 0.010 user 0.025 sys 19.586 real
init: 1 calls 0.039 user 0.000 sys 0.041 real
region: 97912 calls 0.000 user 0.000 sys 0.020 real
tracker: 97912 calls 0.059 user 0.021 sys 0.086 real
overall: 286527488 mem 1.118 user 4.542 sys 2.435 real
ls: cannot access '*.g.vcf.gz': No such file or directory
ls: cannot access '*.g.vcf.gz.tbi': No such file or directory