cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta --algo TNfilter --tumor_sample HCC1395_tumor --normal_sample reference-NA12878 --max_event_count 5 -v positive_somatic_control_1.tnseq.vcf.gz --contamination positive_somatic_control_1.tnseq.contamination_data.tsv --tumor_segments positive_somatic_control_1.tnseq.segments --orientation_priors positive_somatic_control_1.tnseq.orientation_data.tsv positive_somatic_control_1.tnseq.filtered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:115000001, elapsed 0.1s, est remaining 1.0s, peak mem 423MB, user 0.1s, sys 1.7s, output queue size 91
progress 10% @chr2:96000001, elapsed 0.1s, est remaining 0.8s, peak mem 423MB, user 0.3s, sys 6.7s, output queue size 242
progress 15% @chr2:184000001, elapsed 0.1s, est remaining 0.7s, peak mem 423MB, user 0.6s, sys 13.3s, output queue size 385
progress 20% @chr3:152000001, elapsed 0.2s, est remaining 0.7s, peak mem 423MB, user 0.9s, sys 19.6s, output queue size 156
progress 25% @chr4:122000001, elapsed 0.2s, est remaining 0.6s, peak mem 423MB, user 1.3s, sys 26.2s, output queue size 317
progress 30% @chr5:115000001, elapsed 0.2s, est remaining 0.6s, peak mem 423MB, user 1.7s, sys 31.9s, output queue size 478
progress 35% @chr6:44000001, elapsed 0.3s, est remaining 0.5s, peak mem 423MB, user 2.1s, sys 38.8s, output queue size 639
progress 40% @chr7:55000001, elapsed 0.3s, est remaining 0.5s, peak mem 423MB, user 2.5s, sys 45.3s, output queue size 801
progress 45% @chr8:42000001, elapsed 0.3s, est remaining 0.4s, peak mem 423MB, user 2.9s, sys 51.0s, output queue size 962
progress 50% @chr9:125000001, elapsed 0.4s, est remaining 0.4s, peak mem 423MB, user 3.2s, sys 55.4s, output queue size 1124
progress 55% @chr10:102000001, elapsed 0.4s, est remaining 0.3s, peak mem 423MB, user 3.7s, sys 62.0s, output queue size 1285
progress 60% @chr11:120000001, elapsed 0.5s, est remaining 0.3s, peak mem 423MB, user 4.1s, sys 68.2s, output queue size 1447
progress 65% @chr13:22000001, elapsed 0.5s, est remaining 0.3s, peak mem 423MB, user 4.6s, sys 74.9s, output queue size 1609
progress 70% @chr14:69000001, elapsed 0.5s, est remaining 0.2s, peak mem 423MB, user 5.0s, sys 80.9s, output queue size 262
progress 75% @chr16:21000001, elapsed 0.6s, est remaining 0.2s, peak mem 423MB, user 5.3s, sys 88.0s, output queue size 424
progress 80% @chr17:18000001, elapsed 0.6s, est remaining 0.2s, peak mem 423MB, user 5.7s, sys 94.5s, output queue size 586
progress 85% @chr22:22000001, elapsed 0.6s, est remaining 0.1s, peak mem 423MB, user 6.1s, sys 100.3s, output queue size 748
progress 90% @chrX:71000001, elapsed 0.7s, est remaining 0.1s, peak mem 423MB, user 6.6s, sys 106.0s, output queue size 909
progress 95% @chrX:138000001, elapsed 0.7s, est remaining 0.0s, peak mem 423MB, user 7.0s, sys 111.3s, output queue size 1264
progress 100% @HLA-DRB1*15:03:01:01:1, elapsed 0.8s, est remaining 0.0s, peak mem 423MB, user 7.1s, sys 125.6s, output queue size 4495
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
signature: 000a06d1
features: 1f8bfbff fffab20b
extended: f1bf27eb 1b407f7e
amd bits: 2c100800 00000121
brand: Intel(R) Xeon(R) 6975P-C
threads: 192 max 192
algo: TNfilter
license: sentieon:TNhaplotyper=192
input file size: 59580
output file size: 47735
reads: 0
contig: 3367 intervals 3217346917 bases
"learn_filter": 675 calls 0.000 user 0.000 sys 0.013 real
"predict_filter": 225 calls 0.014 user 0.005 sys 0.045 real
advance: 3219322 calls 0.447 user 48.853 sys 58.684 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
execute: 1 calls 0.004 user 0.003 sys 0.859 real
fetch_ref: 592 calls 0.001 user 0.058 sys 0.088 real
idle: 20057 calls 0.524 user 0.294 sys 291.125 real
init: 1 calls 0.221 user 0.102 sys 0.459 real
overall: 443801600 mem 8.539 user 128.894 sys 2.414 real