File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1c/dfbe616950786d6f19cab61ffcb753/.command.err
Size
62.0 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_1;chr19_15162349-15162662.bed)
Attempt

Content

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[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXX5brFKl/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXX5brFKl/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXX5brFKl/chr19_15162349-15162662.bed.gz.tbi
[2026-05-27T17:56:08.470504Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-27T17:56:08.471949Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-27T17:56:08.471959Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-27T17:56:08.471965Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-27T17:56:08.471970Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXX5brFKl'
[2026-05-27T17:56:08.471973Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-27T17:56:08.471978Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-27T17:56:08.471982Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-27T17:56:08.471985Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-05-27T17:56:08.471989Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-27T17:56:08.471997Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-27T17:56:08.472002Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-27T17:56:08.472007Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-27T17:56:08.472011Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-27T17:56:08.472703Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-27T17:56:08.472807Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-27T17:56:08.478578Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-27T17:56:08.479422Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-27T17:56:08.479624Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-27T17:56:08.479836Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-27T17:56:08.480395Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T17:56:08.480862Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-05-27T17:56:08.480982Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-05-27T17:56:08.481058Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-05-27T17:56:08.481180Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-05-27T17:56:08.481321Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-05-27T17:56:08.481729Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-05-27T17:56:08.481853Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.482012Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-05-27T17:56:08.482161Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-05-27T17:56:08.482472Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-05-27T17:56:08.483012Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-05-27T17:56:08.483823Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-05-27T17:56:08.484640Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-05-27T17:56:08.485053Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-27T17:56:08.485230Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-05-27T17:56:08.485365Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-05-27T17:56:08.485432Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-05-27T17:56:08.485545Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-05-27T17:56:08.485610Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-05-27T17:56:08.485797Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-05-27T17:56:08.485866Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-05-27T17:56:08.485979Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-05-27T17:56:08.486065Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-05-27T17:56:08.486420Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-05-27T17:56:08.486677Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-05-27T17:56:08.486798Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-05-27T17:56:08.486862Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-05-27T17:56:08.486973Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-05-27T17:56:08.487039Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-05-27T17:56:08.487153Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-05-27T17:56:08.487221Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-05-27T17:56:08.487338Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-05-27T17:56:08.487403Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-05-27T17:56:08.487513Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-05-27T17:56:08.487578Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-05-27T17:56:08.487688Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-05-27T17:56:08.487799Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-05-27T17:56:08.488055Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-05-27T17:56:08.488390Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-05-27T17:56:08.488634Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-05-27T17:56:08.488989Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-05-27T17:56:08.489108Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-05-27T17:56:08.489175Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-05-27T17:56:08.489795Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-05-27T17:56:08.489859Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-05-27T17:56:08.489974Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-05-27T17:56:08.490097Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-05-27T17:56:08.490601Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-05-27T17:56:08.490665Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-05-27T17:56:08.490772Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-05-27T17:56:08.490835Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-05-27T17:56:08.490943Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-05-27T17:56:08.491009Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-05-27T17:56:08.491120Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-05-27T17:56:08.491181Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-05-27T17:56:08.491294Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-05-27T17:56:08.491357Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-05-27T17:56:08.491461Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-05-27T17:56:08.491526Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-05-27T17:56:08.491794Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-05-27T17:56:08.492212Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-05-27T17:56:08.492324Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-05-27T17:56:08.492385Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-05-27T17:56:08.492491Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-05-27T17:56:08.492555Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-05-27T17:56:08.507546Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-05-27T17:56:08.507814Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-05-27T17:56:08.508019Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-27T17:56:08.508329Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T17:56:08.508400Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T17:56:08.508487Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T17:56:08.508553Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T17:56:08.508657Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-27T17:56:08.508726Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T17:56:08.509942Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-27T17:56:08.510089Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.510752Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.511225Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.511828Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.512767Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.513615Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.514564Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.515532Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.516769Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.518820Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-05-27T17:56:08.522876Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0019] Task initiated on local node
[2026-05-27T17:56:08.525178Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0012] Task initiated on local node
[2026-05-27T17:56:08.528915Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-05-27T17:56:08.531532Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0006] Task initiated on local node
[2026-05-27T17:56:08.534032Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0016] Task initiated on local node
[2026-05-27T17:56:08.535013Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0011] Task initiated on local node
[2026-05-27T17:56:08.606720Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-05-27T17:56:08.633314Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.633962Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.637531Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0014] Task initiated on local node
[2026-05-27T17:56:08.898679Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.899480Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.902530Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0009] Task initiated on local node
[2026-05-27T17:56:09.214193Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:09.214945Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-05-27T17:56:09.217665Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-05-27T17:56:09.278956Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:09.279673Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-05-27T17:56:09.282472Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-05-27T17:56:09.393898Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:09.394608Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-05-27T17:56:09.397343Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0000] Task initiated on local node
[2026-05-27T17:56:09.609029Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:09.609701Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-05-27T17:56:09.612574Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0001] Task initiated on local node
[2026-05-27T17:56:09.641751Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:09.642403Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-05-27T17:56:09.645394Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0017] Task initiated on local node
[2026-05-27T17:56:09.806756Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:09.807492Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-05-27T17:56:09.810405Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-05-27T17:56:09.839500Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:09.840134Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-05-27T17:56:09.842719Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-05-27T17:56:09.904255Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:09.904904Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-05-27T17:56:09.907432Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0012] Task initiated on local node
[2026-05-27T17:56:09.936863Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:09.937507Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-05-27T17:56:09.940011Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0006] Task initiated on local node
[2026-05-27T17:56:09.969629Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:09.970260Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-05-27T17:56:09.972672Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-05-27T17:56:10.134563Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.134634Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.135237Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.135753Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.138944Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0009] Task initiated on local node
[2026-05-27T17:56:10.139788Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-05-27T17:56:10.152963Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.153581Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.156091Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-05-27T17:56:10.169302Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.169899Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.172511Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0018] Task initiated on local node
[2026-05-27T17:56:10.185701Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.186321Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.188751Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-05-27T17:56:10.194013Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.194586Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.197384Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0002] Task initiated on local node
[2026-05-27T17:56:10.226677Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.227242Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.229687Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0011] Task initiated on local node
[2026-05-27T17:56:10.259507Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.260085Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.262691Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0013] Task initiated on local node
[2026-05-27T17:56:10.374381Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.375034Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.377894Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0020] Task initiated on local node
[2026-05-27T17:56:10.940456Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.941286Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.944211Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0010] Task initiated on local node
[2026-05-27T17:56:11.055544Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.056169Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.058777Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-05-27T17:56:11.088222Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.088806Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.091228Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0004] Task initiated on local node
[2026-05-27T17:56:11.253127Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.253684Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.256425Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0013] Task initiated on local node
[2026-05-27T17:56:11.261338Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.261888Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.264800Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-05-27T17:56:11.293898Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.294465Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.296835Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0014] Task initiated on local node
[2026-05-27T17:56:11.302173Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.302716Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.305125Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0018] Task initiated on local node
[2026-05-27T17:56:11.306184Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.306702Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.309116Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-05-27T17:56:11.338520Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.338592Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.338612Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.339087Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.339583Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.340024Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.344184Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0016] Task initiated on local node
[2026-05-27T17:56:11.344571Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0005] Task initiated on local node
[2026-05-27T17:56:11.345207Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-05-27T17:56:11.372478Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.373020Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.375607Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0007] Task initiated on local node
[2026-05-27T17:56:11.376582Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.377046Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.379447Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-05-27T17:56:11.642054Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.642623Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.645546Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0010] Task initiated on local node
[2026-05-27T17:56:11.674537Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.675064Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.677537Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0019] Task initiated on local node
[2026-05-27T17:56:11.706895Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.707421Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.710080Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-05-27T17:56:11.739271Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.739783Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.742462Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-05-27T17:56:11.771753Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.772259Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.774865Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0015] Task initiated on local node
[2026-05-27T17:56:12.087096Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.087657Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.090209Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0004] Task initiated on local node
[2026-05-27T17:56:12.119472Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.119550Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.120002Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.120420Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.123119Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0002] Task initiated on local node
[2026-05-27T17:56:12.124061Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0003] Task initiated on local node
[2026-05-27T17:56:12.125129Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.125616Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.128086Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0001] Task initiated on local node
[2026-05-27T17:56:12.129257Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.129652Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.132101Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0007] Task initiated on local node
[2026-05-27T17:56:12.161643Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.161725Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.161747Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.162163Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.162447Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.163867Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.164834Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0017] Task initiated on local node
[2026-05-27T17:56:12.167074Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_001_chr2_0000] Task initiated on local node
[2026-05-27T17:56:12.167948Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0008] Task initiated on local node
[2026-05-27T17:56:12.196314Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.196388Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.196802Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.198469Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.199261Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-05-27T17:56:12.201448Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-05-27T17:56:12.214636Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.215067Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.217647Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0020] Task initiated on local node
[2026-05-27T17:56:12.247037Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.247104Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.247495Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.249388Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.249849Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.251134Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0000] Task initiated on local node
[2026-05-27T17:56:12.252197Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-05-27T17:56:12.281707Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.281784Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.446179Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.446622Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.449138Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0005] Task initiated on local node
[2026-05-27T17:56:12.478486Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.893477Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.893856Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.896347Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0015] Task initiated on local node
[2026-05-27T17:56:12.926700Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.291450Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.291869Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.294114Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0003] Task initiated on local node
[2026-05-27T17:56:13.323828Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.387889Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.388244Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.390718Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0008] Task initiated on local node
[2026-05-27T17:56:13.420209Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.985679Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.986047Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.988893Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-05-27T17:56:14.017974Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:14.018196Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:14.018310Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T17:56:14.018571Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T17:56:14.019148Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-27T17:56:14.022637Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-27T17:56:14.022854Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-27T17:56:14.023747Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-27T17:56:14.051800Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:14.051863Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:14.051883Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:14.052063Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T17:56:14.052352Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T17:56:14.054697Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-27T17:56:14.055365Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-27T17:56:14.084140Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:14.084209Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:14.084373Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T17:56:14.086768Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-27T17:56:14.116364Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:14.148094Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-27T17:56:19.024052Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-27T17:56:19.024052Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] 
[2026-05-27T17:56:19.024052Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-27T17:56:19.024101Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] 
[2026-05-27T17:56:19.024107Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-27T17:56:19.024115Z] [nf-1cdfbe616950786d6f19cab61ffcb753-528f3-swfrw] [577_1] [WorkflowRunner] Elapsed time for full workflow: 10 sec