cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i Sig_18_Blood.md.bam --interval xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz Sig_18_Blood.table
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:119911554, elapsed 0.0s, est remaining 0.7s, peak mem 163MB, user 0.0s, sys 0.0s, output queue size 590
progress 10% @chr2:19975530, elapsed 0.1s, est remaining 0.6s, peak mem 163MB, user 0.0s, sys 0.0s, output queue size 6464
progress 15% @chr2:189039272, elapsed 0.1s, est remaining 0.6s, peak mem 163MB, user 0.0s, sys 0.0s, output queue size 2611
progress 20% @chr3:97871842, elapsed 0.1s, est remaining 0.5s, peak mem 163MB, user 0.0s, sys 0.0s, output queue size 13077
progress 25% @chr4:88378922, elapsed 0.2s, est remaining 0.5s, peak mem 163MB, user 0.0s, sys 0.0s, output queue size 23347
progress 30% @chr5:146878002, elapsed 0.2s, est remaining 0.5s, peak mem 163MB, user 0.0s, sys 0.0s, output queue size 33382
progress 35% @chr6:127148841, elapsed 0.2s, est remaining 0.4s, peak mem 163MB, user 0.0s, sys 0.0s, output queue size 43329
progress 40% @chr7:128811800, elapsed 0.3s, est remaining 0.4s, peak mem 168MB, user 0.0s, sys 0.0s, output queue size 3446
progress 45% @chr9:1056216, elapsed 0.3s, est remaining 0.4s, peak mem 276MB, user 0.0s, sys 0.0s, output queue size 12819
progress 50% @chr10:32048464, elapsed 0.3s, est remaining 0.3s, peak mem 294MB, user 0.0s, sys 0.0s, output queue size 22751
progress 55% @chr11:48216810, elapsed 0.4s, est remaining 0.3s, peak mem 303MB, user 0.0s, sys 0.0s, output queue size 33219
progress 60% @chr12:21925942, elapsed 0.4s, est remaining 0.3s, peak mem 303MB, user 0.0s, sys 0.0s, output queue size 42768
progress 65% @chr13:49198362, elapsed 0.4s, est remaining 0.2s, peak mem 303MB, user 0.0s, sys 0.0s, output queue size 53818
progress 70% @chr15:42684116, elapsed 0.4s, est remaining 0.2s, peak mem 303MB, user 0.0s, sys 0.0s, output queue size 63865
progress 75% @chr16:30756182, elapsed 0.5s, est remaining 0.2s, peak mem 303MB, user 0.0s, sys 0.0s, output queue size 73419
progress 80% @chr17:42521027, elapsed 0.5s, est remaining 0.1s, peak mem 303MB, user 0.0s, sys 0.0s, output queue size 84114
progress 85% @chr19:5455492, elapsed 0.5s, est remaining 0.1s, peak mem 331MB, user 0.0s, sys 0.0s, output queue size 94519
progress 90% @chr19:55661038, elapsed 0.6s, est remaining 0.1s, peak mem 331MB, user 0.0s, sys 0.0s, output queue size 104018
progress 95% @chr22:37089578, elapsed 0.9s, est remaining 0.0s, peak mem 2530MB, user 6.0s, sys 2.4s, output queue size 3252
progress 100% @chr6_GL000251v2_alt:3936444, elapsed 1.0s, est remaining 0.0s, peak mem 2530MB, user 6.2s, sys 2.4s, output queue size 5783
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
input file size: 52292840
reads: 1001133
contig: 201779 intervals 37922265 bases
advance: 208647 calls 1.734 user 0.057 sys 2.109 real
done: 1 calls 0.248 user 0.100 sys 0.351 real
execute: 1 calls 0.011 user 0.000 sys 0.966 real
fetch_reads: 208647 calls 0.092 user 0.000 sys 0.146 real
fetch_ref: 2072 calls 0.015 user 0.009 sys 0.021 real
fetch_vcf: 2072 calls 0.684 user 0.050 sys 0.931 real
idle: 92 calls 0.003 user 0.000 sys 31.622 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
update: 2257 calls 4.336 user 2.313 sys 7.085 real
overall: 2653720576 mem 10.220 user 8.552 sys 2.332 real
ls: cannot access '*.table.post': No such file or directory
ls: cannot access '*.recalibrated.bam': No such file or directory
ls: cannot access '*.recalibrated.bam.bai': No such file or directory
ls: cannot access '*.csv': No such file or directory
ls: cannot access '*.pdf': No such file or directory