cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i HCC1395_BL.md.bam --read_filter QualCalFilter,table=HCC1395_BL.table,indel=false --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz HCC1395_BL.table.post --algo ReadWriter HCC1395_BL.recalibrated.bam
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:159000001, elapsed 0.1s, est remaining 2.8s, peak mem 365MB, user 0.3s, sys 3.5s, output queue size 8
progress 10% @chr2:73000001, elapsed 0.3s, est remaining 2.3s, peak mem 525MB, user 0.5s, sys 6.7s, output queue size 41
progress 15% @chr2:234000001, elapsed 0.4s, est remaining 2.1s, peak mem 618MB, user 0.8s, sys 9.9s, output queue size 6
progress 20% @chr3:154000001, elapsed 0.5s, est remaining 1.9s, peak mem 705MB, user 1.0s, sys 13.1s, output queue size 14
progress 25% @chr4:116000001, elapsed 0.6s, est remaining 1.8s, peak mem 806MB, user 1.3s, sys 16.2s, output queue size 20
progress 30% @chr5:85000001, elapsed 0.7s, est remaining 1.6s, peak mem 839MB, user 1.5s, sys 19.4s, output queue size 1
progress 35% @chr6:68000001, elapsed 0.8s, est remaining 1.5s, peak mem 944MB, user 1.7s, sys 22.5s, output queue size 23
progress 40% @chr7:54000001, elapsed 0.9s, est remaining 1.4s, peak mem 1004MB, user 1.9s, sys 25.7s, output queue size 1
progress 45% @chr8:48000001, elapsed 1.0s, est remaining 1.3s, peak mem 1172MB, user 2.1s, sys 29.0s, output queue size 65
progress 50% @chr9:74000001, elapsed 1.1s, est remaining 1.1s, peak mem 1268MB, user 2.3s, sys 32.2s, output queue size 11
progress 55% @chr10:96000001, elapsed 1.2s, est remaining 1.0s, peak mem 1298MB, user 2.5s, sys 35.5s, output queue size 2
progress 60% @chr11:123000001, elapsed 1.4s, est remaining 0.9s, peak mem 1338MB, user 2.7s, sys 38.6s, output queue size 20
progress 65% @chr13:14000001, elapsed 1.5s, est remaining 0.8s, peak mem 1368MB, user 2.9s, sys 41.7s, output queue size 1
progress 70% @chr14:62000001, elapsed 1.6s, est remaining 0.7s, peak mem 1448MB, user 3.0s, sys 44.8s, output queue size 13
progress 75% @chr16:14000001, elapsed 1.7s, est remaining 0.6s, peak mem 1523MB, user 3.3s, sys 48.0s, output queue size 1
progress 80% @chr17:68000001, elapsed 1.8s, est remaining 0.4s, peak mem 1578MB, user 3.5s, sys 51.2s, output queue size 16
progress 85% @chr20:26000001, elapsed 1.9s, est remaining 0.3s, peak mem 1647MB, user 3.6s, sys 54.4s, output queue size 10
progress 90% @chrX:44000001, elapsed 2.2s, est remaining 0.2s, peak mem 2796MB, user 6.2s, sys 56.1s, output queue size 114
progress 95% @chrY:42000001, elapsed 2.3s, est remaining 0.1s, peak mem 2822MB, user 8.6s, sys 57.2s, output queue size 276
progress 100% @chr21:41000001, elapsed 4.4s, est remaining 0.0s, peak mem 2842MB, user 20.3s, sys 58.7s, output queue size 3664
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal ReadWriter
license: sentieon:QualCal=31 sentieon:ReadWriter=31
input file size: 51397268
output file size: 71738970
reads: 1001089
contig: 3367 intervals 3217346917 bases
ReadQualCal::clearEPSVecOne: 8 calls 0.000 user 0.000 sys 0.018 real
ReadQualCal::delayed_init: 1 calls 0.002 user 0.000 sys 0.026 real
ReadQualCal::init: 1 calls 0.010 user 0.000 sys 0.006 real
advance: 3219322 calls 1.526 user 7.208 sys 8.627 real
done: 1 calls 0.306 user 0.197 sys 0.504 real
exec_no_coor: 1 calls 0.000 user 0.000 sys 0.000 real
execute: 1 calls 0.004 user 0.000 sys 4.424 real
fetch: 3219322 calls 0.220 user 6.443 sys 7.627 real
fetch_reads: 3219322 calls 0.409 user 6.781 sys 7.711 real
fetch_ref: 13103 calls 0.077 user 0.002 sys 0.051 real
fetch_vcf: 13103 calls 1.233 user 0.052 sys 1.373 real
idle: 2007 calls 1.092 user 0.254 sys 99.309 real
init: 1 calls 0.005 user 0.000 sys 0.032 real
update: 13298 calls 5.685 user 1.574 sys 7.865 real
write: 3219322 calls 7.627 user 7.126 sys 14.542 real
overall: 2982088704 mem 24.221 user 59.567 sys 6.254 real
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 --algo QualCal --plot --before HCC1395_BL.table --after HCC1395_BL.table.post HCC1395_BL.csv
This software is licensed to bgold@natera.com by Sentieon Inc.
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
ReadQualCal::init: 2 calls 0.020 user 0.010 sys 0.025 real
done: 1 calls 0.031 user 0.029 sys 0.055 real
idle: 61 calls 0.002 user 0.000 sys 31.305 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 83648512 mem 0.038 user 0.067 sys 1.053 real