File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/b3cd64d91032351268d77a44258aa7/.command.log
Size
1.6 KB
Task
DAQ:SAMTOOLS_MERGE (HCC1395_tumor)
Attempt

Content

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  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4b/dd461d6772e608a943a5ffca829c15/HCC1395_tumor.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/87/c74b32e150eb5f2f15952f41e26c85/HCC1395_tumor.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/b3cd64d91032351268d77a44258aa7/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/93/b3a6c4953c5bd81cbf1c12672c861b/HCC1395_tumor.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/00/243e6043a1d5ffa3c0ba5fb61766f4/HCC1395_tumor.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/c47f2fcde23fde6ae14a072011101c/HCC1395_tumor.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/b3cd64d91032351268d77a44258aa7/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/63/a6fb6465da4d90b0468b4897253c33/HCC1395_tumor.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7e/8ba40a735827e24470004eb8de4fe4/HCC1395_tumor.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/aa/4e4cea50c60380e08d3e73d1ae1fc6/HCC1395_tumor.bam
==> STAGING COMPLETE (12 inputs)

ls: cannot access '*.cram': No such file or directory
ls: cannot access '*.crai': No such file or directory