File Info

Filename
output/Logs/Info.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e0/e5b2cf2a29915f2d4e46a739893ee1/output/Logs/Info.log
Size
3.3 KB
Attempt
2026-05-27T17:47:01Z thread 446 Sample sheet being processed by common lib? Yes
2026-05-27T17:47:01Z thread 446 SampleSheet Settings: 
2026-05-27T17:47:01Z thread 446   OverrideCycles = Y150;I8;I8;Y150
2026-05-27T17:47:01Z thread 446 
2026-05-27T17:47:01Z thread 446 shared-thread-linux-native-asio output is disabled
2026-05-27T17:47:01Z thread 446 bcl-convert Version 4.4.6
2026-05-27T17:47:01Z thread 446 Copyright (c) 2014-2025 Illumina, Inc.
2026-05-27T17:47:01Z thread 446 Command Line: --tiles s_4 --output-directory output --bcl-input-directory rundir --sample-sheet rundir/SampleSheet.csv 
2026-05-27T17:47:01Z thread 446 Conversion Begins.
2026-05-27T17:47:01Z thread 446 Input BCL Information:
2026-05-27T17:47:01Z thread 446     Read Structure: 2026-05-27T17:47:01Z thread 446 Y1502026-05-27T17:47:01Z thread 446 ;2026-05-27T17:47:01Z thread 446 I82026-05-27T17:47:01Z thread 446 ;2026-05-27T17:47:01Z thread 446 I82026-05-27T17:47:01Z thread 446 ;2026-05-27T17:47:01Z thread 446 Y1502026-05-27T17:47:01Z thread 446 
2026-05-27T17:47:01Z thread 446     RunInfo.xml file lists: 8 lanes, 8 tiles
2026-05-27T17:47:01Z thread 446     BCL file format: bcl.gz
2026-05-27T17:47:01Z thread 446     Positions file format: locs
2026-05-27T17:47:01Z thread 446     Filter file format: filter
2026-05-27T17:47:01Z thread 446 Conversion Information:
2026-05-27T17:47:01Z thread 446     Tile filtering: converting 1/8 tiles
2026-05-27T17:47:01Z thread 446     Lane 1 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-05-27T17:47:01Z thread 446     Lane 2 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-05-27T17:47:01Z thread 446     Lane 3 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-05-27T17:47:01Z thread 446     Lane 5 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-05-27T17:47:01Z thread 446     Lane 6 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-05-27T17:47:01Z thread 446     Lane 7 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-05-27T17:47:01Z thread 446     Lane 8 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-05-27T17:47:01Z thread 446     Sample Count: 4
2026-05-27T17:47:01Z thread 446     Expected number of sample FASTQ files to be created: 8
2026-05-27T17:47:01Z thread 446 # CPU hw threads available: 64
2026-05-27T17:47:01Z thread 446 Parallel Tiles: 4. Threads Per Tile: 16
2026-05-27T17:47:01Z thread 446 SW compressors: 64
2026-05-27T17:47:01Z thread 446 SW decompressors: 32
2026-05-27T17:47:01Z thread 446 SW FASTQ compression level: 1
2026-05-27T17:47:01Z thread 446 Lane 4 Post-run Information:
2026-05-27T17:47:01Z thread 446     Total clusters: 250000
2026-05-27T17:47:01Z thread 446     Total Genomic Reads: 500000
2026-05-27T17:47:01Z thread 446     Total Genomic Input Gigabases 0.08
2026-05-27T17:47:01Z thread 446     Minimum reads for a sample: 124566
2026-05-27T17:47:01Z thread 446     Maximum reads for a sample: 125346
2026-05-27T17:47:01Z thread 446     Average reads per sample: 125000.00
2026-05-27T17:47:01Z thread 446     Undetermined reads: 0
2026-05-27T17:47:01Z thread 446 Conversion Complete.