Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/0f20df2ba7cacf28a35a20039d1aae/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/0f20df2ba7cacf28a35a20039d1aae/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ed/1a1656640c36caafc45df505cb7858/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/0f20df2ba7cacf28a35a20039d1aae/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/43/ffcaa737a9c63096c75057feae8e44/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/43/ffcaa737a9c63096c75057feae8e44/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-u78quid2 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-05-27 18:00:38,668 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-05-27 18:00:39,464 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-05-27 18:00:39,633 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-05-27 18:00:40,527 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-05-27 18:00:40,688 - cnv_pipe.batch.run_model - INFO - Processing cluster 982 with 177 probes
2026-05-27 18:00:41,057 - cnv_pipe.batch.run_model.cluster982 - INFO - Child process started for cluster 982 with 177 probes
2026-05-27 18:01:32,210 - cnv_pipe.batch.run_model.cluster982 - INFO - Child process finished cluster 982. Wrote cluster_982_samples.csv and cluster_982_params.csv
2026-05-27 18:01:32,211 - cnv_pipe.batch.run_model - INFO - Cluster 982 finished in 51.52 seconds. Status: SUCCESS