File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/83/e04890d6576191cf44da89a7687286/.command.log
Size
87.4 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_2;chr4_22420786-22421189.bed)
Attempt

Content

View in new tab 
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr4_22420786-22421189.bed.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/83/e04890d6576191cf44da89a7687286/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr4_22420786-22421189.bed.gz
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/83/e04890d6576191cf44da89a7687286/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/51/68b1ddebfbdf4e2da9223013804a70/Sig_18_Blood.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/51/68b1ddebfbdf4e2da9223013804a70/Sig_18_Blood.recalibrated.bam
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-05-27T17:56:09.221755Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-27T17:56:09.223345Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-27T17:56:09.223359Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-27T17:56:09.223363Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-27T17:56:09.223368Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXX6op2jw'
[2026-05-27T17:56:09.223371Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-27T17:56:09.223376Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-27T17:56:09.223380Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-27T17:56:09.223383Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-05-27T17:56:09.223387Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-27T17:56:09.223391Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-27T17:56:09.223394Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-27T17:56:09.223398Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-27T17:56:09.223402Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-27T17:56:09.223871Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-27T17:56:09.223989Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-27T17:56:09.229618Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-27T17:56:09.230411Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-27T17:56:09.230642Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-27T17:56:09.230896Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-27T17:56:09.231134Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.231703Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.231840Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.231915Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.232034Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.232098Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.232266Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.232480Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.232795Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.232918Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T17:56:09.233074Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.233508Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.233934Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.235177Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.235665Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.235818Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-27T17:56:09.236263Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.236336Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.236450Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.236511Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.236694Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.236762Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.236881Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.236949Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.237059Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.237124Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.237517Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.237705Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.237817Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.237881Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.238014Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.238113Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.238232Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.238297Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.238413Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.238479Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.238591Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.238654Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.238781Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.238927Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.239213Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.239515Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.239765Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.240193Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.240607Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.240670Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.240781Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.240843Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.241011Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.241075Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.241183Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.241246Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.241355Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.241415Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.241523Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.241591Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.242014Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.242437Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.242549Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.242622Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.242735Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.242798Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.242907Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.242972Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.243080Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.243148Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.243258Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.243320Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.243445Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.243747Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.244207Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.244271Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.244378Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.244442Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.245697Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.246307Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.246440Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.246509Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.246621Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.246685Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.246795Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.246856Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.246966Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.247027Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.247138Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.247204Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.247424Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.248031Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.248143Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.248208Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.248323Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.248411Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.248518Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.248581Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.248709Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.248772Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.266124Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.266503Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.266735Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:09.266865Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.267831Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.267945Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-05-27T17:56:09.268088Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.268515Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-05-27T17:56:09.268769Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.269155Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.269394Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-05-27T17:56:09.270092Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-05-27T17:56:09.270612Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.271057Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-05-27T17:56:09.271385Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T17:56:09.272150Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-27T17:56:09.273037Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-05-27T17:56:09.275034Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-05-27T17:56:09.275732Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0002] Task initiated on local node
[2026-05-27T17:56:09.276293Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-05-27T17:56:09.281474Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0013] Task initiated on local node
[2026-05-27T17:56:09.284395Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0001] Task initiated on local node
[2026-05-27T17:56:09.287531Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0006] Task initiated on local node
[2026-05-27T17:56:09.289633Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0013] Task initiated on local node
[2026-05-27T17:56:09.289956Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0015] Task initiated on local node
[2026-05-27T17:56:09.292561Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0011] Task initiated on local node
[2026-05-27T17:56:09.294832Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0000] Task initiated on local node
[2026-05-27T17:56:09.358240Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:09.359040Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-05-27T17:56:09.362226Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0008] Task initiated on local node
[2026-05-27T17:56:09.874830Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:09.875903Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-05-27T17:56:09.878736Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0014] Task initiated on local node
[2026-05-27T17:56:09.891796Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:09.892703Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-05-27T17:56:09.895424Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0012] Task initiated on local node
[2026-05-27T17:56:10.107259Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.108256Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.111239Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0007] Task initiated on local node
[2026-05-27T17:56:10.124193Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.125063Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.127637Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0001] Task initiated on local node
[2026-05-27T17:56:10.156978Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.157830Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.160528Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0001] Task initiated on local node
[2026-05-27T17:56:10.189798Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.190722Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.193676Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0009] Task initiated on local node
[2026-05-27T17:56:10.605847Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.606821Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.609631Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0005] Task initiated on local node
[2026-05-27T17:56:10.614492Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.615310Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.617763Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0014] Task initiated on local node
[2026-05-27T17:56:10.647241Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.647323Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.648175Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.648441Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.651313Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0000] Task initiated on local node
[2026-05-27T17:56:10.652523Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0004] Task initiated on local node
[2026-05-27T17:56:10.680719Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.681563Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.684315Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0014] Task initiated on local node
[2026-05-27T17:56:10.713642Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.714510Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.716975Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0002] Task initiated on local node
[2026-05-27T17:56:10.746409Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.747258Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.749818Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0012] Task initiated on local node
[2026-05-27T17:56:10.911624Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.912578Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.915167Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0001] Task initiated on local node
[2026-05-27T17:56:10.928544Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.929396Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.932293Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0011] Task initiated on local node
[2026-05-27T17:56:10.945286Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.946107Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.948683Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0008] Task initiated on local node
[2026-05-27T17:56:10.977952Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.978822Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.981245Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0002] Task initiated on local node
[2026-05-27T17:56:11.010810Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.011644Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.014410Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0008] Task initiated on local node
[2026-05-27T17:56:11.027506Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.028304Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.030836Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0007] Task initiated on local node
[2026-05-27T17:56:11.060186Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.060971Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.063440Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0012] Task initiated on local node
[2026-05-27T17:56:11.093076Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.093840Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.096380Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0011] Task initiated on local node
[2026-05-27T17:56:11.125956Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.126745Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.129392Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0013] Task initiated on local node
[2026-05-27T17:56:11.158819Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.159605Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.162246Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0010] Task initiated on local node
[2026-05-27T17:56:11.223772Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.224575Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.227188Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0002] Task initiated on local node
[2026-05-27T17:56:11.256630Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.257423Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.259899Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0011] Task initiated on local node
[2026-05-27T17:56:11.421945Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.422785Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.425249Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0009] Task initiated on local node
[2026-05-27T17:56:11.454896Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.455673Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.458254Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0003] Task initiated on local node
[2026-05-27T17:56:11.569928Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.570792Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.573673Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0005] Task initiated on local node
[2026-05-27T17:56:11.602877Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.603629Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.606063Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0014] Task initiated on local node
[2026-05-27T17:56:11.635599Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.636327Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.639051Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0007] Task initiated on local node
[2026-05-27T17:56:11.800467Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.801198Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.804021Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0002] Task initiated on local node
[2026-05-27T17:56:12.065818Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.066675Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.069319Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0010] Task initiated on local node
[2026-05-27T17:56:12.082458Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.083286Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.085965Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0008] Task initiated on local node
[2026-05-27T17:56:12.099330Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.100070Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.102785Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0006] Task initiated on local node
[2026-05-27T17:56:12.115937Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.116659Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.119415Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0013] Task initiated on local node
[2026-05-27T17:56:12.148733Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.148805Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.149465Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.149755Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.152506Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0006] Task initiated on local node
[2026-05-27T17:56:12.153397Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0015] Task initiated on local node
[2026-05-27T17:56:12.181790Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.182543Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.185195Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0009] Task initiated on local node
[2026-05-27T17:56:12.296677Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.297514Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.300480Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0002] Task initiated on local node
[2026-05-27T17:56:12.329540Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.330309Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.333139Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0015] Task initiated on local node
[2026-05-27T17:56:12.362505Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.363214Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.365850Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0004] Task initiated on local node
[2026-05-27T17:56:12.395219Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.395946Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.398558Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0003] Task initiated on local node
[2026-05-27T17:56:12.510166Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.510926Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.513801Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0007] Task initiated on local node
[2026-05-27T17:56:12.542984Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.543688Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.546478Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0012] Task initiated on local node
[2026-05-27T17:56:12.608055Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.608740Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.611508Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0006] Task initiated on local node
[2026-05-27T17:56:12.823499Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.824270Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.827179Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0000] Task initiated on local node
[2026-05-27T17:56:12.988675Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.989422Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.992241Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0003] Task initiated on local node
[2026-05-27T17:56:13.021438Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.022181Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.024830Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0010] Task initiated on local node
[2026-05-27T17:56:13.029848Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.030489Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.032751Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0009] Task initiated on local node
[2026-05-27T17:56:13.062380Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.063007Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.065746Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0014] Task initiated on local node
[2026-05-27T17:56:13.078975Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.079568Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.082171Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0011] Task initiated on local node
[2026-05-27T17:56:13.111422Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.112093Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.114657Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0005] Task initiated on local node
[2026-05-27T17:56:13.577500Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.577590Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.578267Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.578572Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.581501Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0003] Task initiated on local node
[2026-05-27T17:56:13.582502Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0000] Task initiated on local node
[2026-05-27T17:56:13.610758Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.611385Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.614252Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0001] Task initiated on local node
[2026-05-27T17:56:13.643447Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.644063Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.646870Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0005] Task initiated on local node
[2026-05-27T17:56:13.758454Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.759131Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.762152Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0007] Task initiated on local node
[2026-05-27T17:56:13.791375Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.792174Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.794242Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.795030Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0004] Task initiated on local node
[2026-05-27T17:56:13.795547Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.795810Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.797536Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.798805Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0000] Task initiated on local node
[2026-05-27T17:56:13.799788Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0010] Task initiated on local node
[2026-05-27T17:56:13.813428Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.813504Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.814076Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.814430Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.817409Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0014] Task initiated on local node
[2026-05-27T17:56:13.818574Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0010] Task initiated on local node
[2026-05-27T17:56:13.830299Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.830382Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.830905Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.831206Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.834060Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0012] Task initiated on local node
[2026-05-27T17:56:13.847603Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.848148Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.850537Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0001] Task initiated on local node
[2026-05-27T17:56:13.861425Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0013] Task initiated on local node
[2026-05-27T17:56:13.863872Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.863940Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.864413Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.864750Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.867449Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0015] Task initiated on local node
[2026-05-27T17:56:13.868366Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0009] Task initiated on local node
[2026-05-27T17:56:13.881961Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.882543Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.884958Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0008] Task initiated on local node
[2026-05-27T17:56:13.898716Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.899260Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.901819Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0006] Task initiated on local node
[2026-05-27T17:56:13.907018Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.907532Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.910171Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0006] Task initiated on local node
[2026-05-27T17:56:13.915216Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.915680Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.918260Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0005] Task initiated on local node
[2026-05-27T17:56:13.931434Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.931995Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.934747Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0012] Task initiated on local node
[2026-05-27T17:56:13.935646Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.936086Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.938534Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0004] Task initiated on local node
[2026-05-27T17:56:13.951910Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.952413Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.954902Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_003_chr4_0000] Task initiated on local node
[2026-05-27T17:56:13.968250Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.968753Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.970982Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0007] Task initiated on local node
[2026-05-27T17:56:14.000580Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:14.000652Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:14.001109Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-05-27T17:56:14.001369Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-05-27T17:56:14.004562Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0000] Task initiated on local node
[2026-05-27T17:56:14.005384Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0003] Task initiated on local node
[2026-05-27T17:56:14.065434Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:14.065934Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-05-27T17:56:14.068483Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0013] Task initiated on local node
[2026-05-27T17:56:14.097857Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:14.098380Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-05-27T17:56:14.100427Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:14.100923Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-05-27T17:56:14.101098Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0011] Task initiated on local node
[2026-05-27T17:56:14.103578Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0005] Task initiated on local node
[2026-05-27T17:56:14.133015Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:14.133087Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:14.397433Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:14.397863Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-05-27T17:56:14.400553Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0004] Task initiated on local node
[2026-05-27T17:56:14.430914Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:14.434462Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:14.434825Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-05-27T17:56:14.437363Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0008] Task initiated on local node
[2026-05-27T17:56:14.466951Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:14.631332Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:14.631837Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-05-27T17:56:14.634250Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0010] Task initiated on local node
[2026-05-27T17:56:14.663830Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:14.727991Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:14.728405Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-05-27T17:56:14.730441Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0009] Task initiated on local node
[2026-05-27T17:56:14.760217Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:14.924379Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:14.924780Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-05-27T17:56:14.927052Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0004] Task initiated on local node
[2026-05-27T17:56:14.956606Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:15.622028Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:15.622426Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-05-27T17:56:15.624823Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0003] Task initiated on local node
[2026-05-27T17:56:15.654491Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:15.654746Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:15.654850Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-27T17:56:15.655262Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T17:56:15.655454Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T17:56:15.659689Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-27T17:56:15.660672Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-27T17:56:15.661614Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-27T17:56:15.687797Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:15.687866Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:15.687889Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:15.688067Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T17:56:15.689420Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T17:56:15.690087Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-27T17:56:15.692173Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-27T17:56:15.721620Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:15.721736Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:15.721906Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T17:56:15.724247Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-27T17:56:15.754154Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:19.828934Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-27T17:56:28.111628Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-27T17:56:28.111628Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] 
[2026-05-27T17:56:28.111628Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-27T17:56:28.111720Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] 
[2026-05-27T17:56:28.111733Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-27T17:56:28.111740Z] [nf-83e04890d6576191cf44da89a7687286-df69f-2rhxr] [567_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec