cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i Sig_18_Blood.md.bam --read_filter QualCalFilter,table=Sig_18_Blood.table,indel=false --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz Sig_18_Blood.table.post --algo ReadWriter Sig_18_Blood.recalibrated.bam
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:163000001, elapsed 0.1s, est remaining 2.1s, peak mem 331MB, user 0.3s, sys 2.6s, output queue size 13
progress 10% @chr2:57000001, elapsed 0.2s, est remaining 1.8s, peak mem 550MB, user 0.6s, sys 5.1s, output queue size 41
progress 15% @chr2:237000001, elapsed 0.3s, est remaining 1.6s, peak mem 616MB, user 0.7s, sys 7.6s, output queue size 16
progress 20% @chr3:156000001, elapsed 0.4s, est remaining 1.5s, peak mem 747MB, user 0.9s, sys 10.1s, output queue size 19
progress 25% @chr4:118000001, elapsed 0.5s, est remaining 1.4s, peak mem 831MB, user 1.2s, sys 12.5s, output queue size 13
progress 30% @chr5:87000001, elapsed 0.5s, est remaining 1.3s, peak mem 906MB, user 1.4s, sys 14.9s, output queue size 9
progress 35% @chr6:65000001, elapsed 0.6s, est remaining 1.2s, peak mem 945MB, user 1.6s, sys 17.3s, output queue size 10
progress 40% @chr7:34000001, elapsed 0.7s, est remaining 1.1s, peak mem 999MB, user 1.8s, sys 19.7s, output queue size 21
progress 45% @chr8:57000001, elapsed 0.8s, est remaining 1.0s, peak mem 1083MB, user 2.0s, sys 22.1s, output queue size 9
progress 50% @chr9:76000001, elapsed 0.9s, est remaining 0.9s, peak mem 1165MB, user 2.2s, sys 24.5s, output queue size 14
progress 55% @chr10:96000001, elapsed 1.0s, est remaining 0.8s, peak mem 1218MB, user 2.4s, sys 26.9s, output queue size 7
progress 60% @chr11:123000001, elapsed 1.1s, est remaining 0.7s, peak mem 1261MB, user 2.6s, sys 29.4s, output queue size 13
progress 65% @chr13:17000001, elapsed 1.1s, est remaining 0.6s, peak mem 1326MB, user 2.7s, sys 31.9s, output queue size 23
progress 70% @chr14:64000001, elapsed 1.2s, est remaining 0.5s, peak mem 1416MB, user 3.0s, sys 34.3s, output queue size 17
progress 75% @chr16:17000001, elapsed 1.3s, est remaining 0.4s, peak mem 1473MB, user 3.2s, sys 36.7s, output queue size 14
progress 80% @chr18:1000001, elapsed 1.4s, est remaining 0.3s, peak mem 1522MB, user 3.4s, sys 39.2s, output queue size 14
progress 85% @chr20:23000001, elapsed 1.5s, est remaining 0.3s, peak mem 1558MB, user 3.6s, sys 41.8s, output queue size 17
progress 90% @chrX:42000001, elapsed 1.8s, est remaining 0.2s, peak mem 2799MB, user 6.6s, sys 43.3s, output queue size 114
progress 95% @chrY:46000001, elapsed 1.9s, est remaining 0.1s, peak mem 2824MB, user 7.8s, sys 43.9s, output queue size 276
progress 100% @chr21:41000001, elapsed 4.2s, est remaining 0.0s, peak mem 2842MB, user 21.4s, sys 45.1s, output queue size 3664
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal ReadWriter
license: sentieon:QualCal=31 sentieon:ReadWriter=31
input file size: 52292840
output file size: 74318159
reads: 1001133
contig: 3367 intervals 3217346917 bases
ReadQualCal::clearEPSVecOne: 8 calls 0.000 user 0.000 sys 0.018 real
ReadQualCal::delayed_init: 1 calls 0.002 user 0.000 sys 0.024 real
ReadQualCal::init: 1 calls 0.009 user 0.001 sys 0.006 real
advance: 3219322 calls 1.282 user 5.321 sys 7.104 real
done: 1 calls 0.317 user 0.176 sys 0.495 real
exec_no_coor: 1 calls 0.000 user 0.000 sys 0.000 real
execute: 1 calls 0.003 user 0.000 sys 4.255 real
fetch: 3219322 calls 0.267 user 4.993 sys 5.827 real
fetch_reads: 3219322 calls 0.376 user 5.433 sys 5.913 real
fetch_ref: 13318 calls 0.047 user 0.038 sys 0.052 real
fetch_vcf: 13318 calls 1.272 user 0.045 sys 1.373 real
idle: 2118 calls 1.311 user 0.237 sys 90.605 real
init: 1 calls 0.006 user 0.000 sys 0.030 real
update: 13537 calls 5.991 user 1.281 sys 7.821 real
write: 3219322 calls 8.417 user 5.629 sys 14.050 real
overall: 2980626432 mem 25.866 user 45.783 sys 5.583 real
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 --algo QualCal --plot --before Sig_18_Blood.table --after Sig_18_Blood.table.post Sig_18_Blood.csv
This software is licensed to bgold@natera.com by Sentieon Inc.
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
ReadQualCal::init: 2 calls 0.028 user 0.002 sys 0.027 real
done: 1 calls 0.057 user 0.003 sys 0.058 real
idle: 61 calls 0.002 user 0.000 sys 31.168 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 83648512 mem 0.085 user 0.021 sys 1.049 real