.command.err - Workdir - DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_1;chr4_22420786-22421189.bed)

File Info

Filename: .command.err
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d5/e8615be6228e12022dd52e83913f0d/.command.err
Size: 85.8 KB
Task: DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_1;chr4_22420786-22421189.bed)
Attempt
Content

[2026-05-27T17:56:06.609306Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-27T17:56:06.609943Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-27T17:56:06.609951Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-27T17:56:06.609955Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-27T17:56:06.609958Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXGv7HLq'
[2026-05-27T17:56:06.609962Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-27T17:56:06.609966Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-27T17:56:06.609970Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-27T17:56:06.609974Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-05-27T17:56:06.609977Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-27T17:56:06.609981Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-27T17:56:06.609984Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-27T17:56:06.609987Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-27T17:56:06.609991Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-27T17:56:06.610647Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-27T17:56:06.610756Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-27T17:56:06.616454Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-27T17:56:06.617075Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-27T17:56:06.617318Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-27T17:56:06.617569Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-27T17:56:06.617812Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.618362Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.618454Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.618525Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.618641Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.618708Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.618827Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.618889Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.619174Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.619456Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.619659Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.619788Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.619922Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.620159Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.620598Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.621294Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.622799Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.623131Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-27T17:56:06.623189Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.623263Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.623451Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.623520Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.623827Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.624085Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.624200Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.624263Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.624377Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.624439Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.624547Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.624613Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.624721Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.624787Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.624900Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.624982Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.625134Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.625261Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.625679Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.625745Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.625855Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.625922Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.626034Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.626094Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.626204Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.626287Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.626393Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.626455Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.626565Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.626638Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.626870Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.627084Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.627532Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.627973Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.628089Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.628150Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.628261Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.628323Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.628433Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.628497Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.628602Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.628668Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.628778Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.628839Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.628952Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.629058Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.629347Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.629833Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.629949Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.630013Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.630144Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.630215Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.630325Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.630388Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.630497Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.630561Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.632064Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.632687Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.632827Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.632898Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.633010Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.633098Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.633213Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.633283Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.633405Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.633469Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.633577Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.633644Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.633787Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.633987Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.634649Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.634713Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.634828Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.634893Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.635000Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.635063Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.635173Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.635236Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.651816Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.652443Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.652670Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.652774Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.653792Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.653850Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.654315Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.654609Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.654998Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.655314Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.655653Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.656138Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.656871Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.657188Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.657678Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.658066Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.658498Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-27T17:56:06.659709Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.660637Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.664262Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0006] Task initiated on local node
[2026-05-27T17:56:06.665047Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0006] Task initiated on local node
[2026-05-27T17:56:06.670484Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0002] Task initiated on local node
[2026-05-27T17:56:06.673062Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0002] Task initiated on local node
[2026-05-27T17:56:06.675966Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0013] Task initiated on local node
[2026-05-27T17:56:06.679070Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0009] Task initiated on local node
[2026-05-27T17:56:06.679426Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0008] Task initiated on local node
[2026-05-27T17:56:07.294987Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:07.295967Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-05-27T17:56:07.299072Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0014] Task initiated on local node
[2026-05-27T17:56:07.560695Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:07.561827Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-05-27T17:56:07.564856Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0003] Task initiated on local node
[2026-05-27T17:56:07.726317Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:07.727301Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-05-27T17:56:07.730117Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0012] Task initiated on local node
[2026-05-27T17:56:07.891704Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:07.892766Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-05-27T17:56:07.895562Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0009] Task initiated on local node
[2026-05-27T17:56:08.007283Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.008322Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.011060Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0007] Task initiated on local node
[2026-05-27T17:56:08.172727Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.173828Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.176618Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0000] Task initiated on local node
[2026-05-27T17:56:08.208154Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0010] Task initiated on local node
[2026-05-27T17:56:08.237949Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.238030Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.238050Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.238074Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.239024Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.239497Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.241229Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.242605Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0006] Task initiated on local node
[2026-05-27T17:56:08.243590Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.243680Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0013] Task initiated on local node
[2026-05-27T17:56:08.246332Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0011] Task initiated on local node
[2026-05-27T17:56:08.246960Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0010] Task initiated on local node
[2026-05-27T17:56:08.275825Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.276922Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.280058Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0003] Task initiated on local node
[2026-05-27T17:56:08.284910Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.285762Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.288378Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0001] Task initiated on local node
[2026-05-27T17:56:08.289515Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.290295Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.293047Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0005] Task initiated on local node
[2026-05-27T17:56:08.454613Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.455612Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.458650Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0001] Task initiated on local node
[2026-05-27T17:56:08.487646Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.488644Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.491406Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0006] Task initiated on local node
[2026-05-27T17:56:08.602879Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.603927Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.606739Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0002] Task initiated on local node
[2026-05-27T17:56:08.668152Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.669194Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.672116Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0005] Task initiated on local node
[2026-05-27T17:56:08.833827Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.834794Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.837429Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0005] Task initiated on local node
[2026-05-27T17:56:08.866749Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.867717Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.870627Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0014] Task initiated on local node
[2026-05-27T17:56:08.931980Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.932081Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.932110Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.933003Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.933402Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.933820Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.937350Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0008] Task initiated on local node
[2026-05-27T17:56:08.938502Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0014] Task initiated on local node
[2026-05-27T17:56:08.939351Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0000] Task initiated on local node
[2026-05-27T17:56:08.998920Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.999006Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.999878Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-05-27T17:56:09.000323Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-05-27T17:56:09.003211Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_003_chr4_0000] Task initiated on local node
[2026-05-27T17:56:09.004367Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0004] Task initiated on local node
[2026-05-27T17:56:09.066148Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:09.067100Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-05-27T17:56:09.069730Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0015] Task initiated on local node
[2026-05-27T17:56:09.131275Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:09.132235Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-05-27T17:56:09.135394Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0007] Task initiated on local node
[2026-05-27T17:56:09.164223Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:09.165165Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-05-27T17:56:09.168188Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0007] Task initiated on local node
[2026-05-27T17:56:09.329720Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:09.330670Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-05-27T17:56:09.333492Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0009] Task initiated on local node
[2026-05-27T17:56:09.362712Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:09.363578Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-05-27T17:56:09.366944Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0010] Task initiated on local node
[2026-05-27T17:56:09.628467Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:09.629389Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-05-27T17:56:09.632371Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0003] Task initiated on local node
[2026-05-27T17:56:09.661594Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:09.662499Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-05-27T17:56:09.665087Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0009] Task initiated on local node
[2026-05-27T17:56:09.726581Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:09.727532Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-05-27T17:56:09.730361Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0003] Task initiated on local node
[2026-05-27T17:56:09.759569Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:09.760460Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-05-27T17:56:09.763298Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0012] Task initiated on local node
[2026-05-27T17:56:09.768285Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:09.769086Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-05-27T17:56:09.771701Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0005] Task initiated on local node
[2026-05-27T17:56:09.800989Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:09.801089Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:09.801917Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-05-27T17:56:09.802320Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-05-27T17:56:09.805171Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0004] Task initiated on local node
[2026-05-27T17:56:09.806422Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0006] Task initiated on local node
[2026-05-27T17:56:09.834582Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:09.835419Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-05-27T17:56:09.838336Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0004] Task initiated on local node
[2026-05-27T17:56:09.949670Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:09.950531Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-05-27T17:56:09.953370Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0011] Task initiated on local node
[2026-05-27T17:56:09.982589Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:09.983349Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-05-27T17:56:09.986261Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0002] Task initiated on local node
[2026-05-27T17:56:10.097992Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.098879Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.101539Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0006] Task initiated on local node
[2026-05-27T17:56:10.130949Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.131848Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.134721Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0008] Task initiated on local node
[2026-05-27T17:56:10.163813Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.163898Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.164658Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.165069Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.167892Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0001] Task initiated on local node
[2026-05-27T17:56:10.168692Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0010] Task initiated on local node
[2026-05-27T17:56:10.196974Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.197761Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.200211Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0000] Task initiated on local node
[2026-05-27T17:56:10.229535Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.230309Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.233162Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0012] Task initiated on local node
[2026-05-27T17:56:10.444726Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.445605Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.448362Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0002] Task initiated on local node
[2026-05-27T17:56:10.477488Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.477572Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.478320Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.478654Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.481852Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0004] Task initiated on local node
[2026-05-27T17:56:10.482739Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0000] Task initiated on local node
[2026-05-27T17:56:10.510870Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.511712Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.514472Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0001] Task initiated on local node
[2026-05-27T17:56:10.515195Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.515786Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.518077Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0004] Task initiated on local node
[2026-05-27T17:56:10.547667Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.548625Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.548890Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.551365Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.552900Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0007] Task initiated on local node
[2026-05-27T17:56:10.553859Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0014] Task initiated on local node
[2026-05-27T17:56:10.716138Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.716902Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.719767Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0015] Task initiated on local node
[2026-05-27T17:56:10.748997Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.749781Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.752625Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0010] Task initiated on local node
[2026-05-27T17:56:10.964413Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.965213Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.968067Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0004] Task initiated on local node
[2026-05-27T17:56:10.997211Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.997946Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.000767Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0005] Task initiated on local node
[2026-05-27T17:56:11.112460Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.113303Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.116293Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0000] Task initiated on local node
[2026-05-27T17:56:11.145451Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.146216Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.149165Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0011] Task initiated on local node
[2026-05-27T17:56:11.361180Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.361946Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.364880Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0012] Task initiated on local node
[2026-05-27T17:56:11.426320Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.427090Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.430095Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0014] Task initiated on local node
[2026-05-27T17:56:11.459249Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.459984Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.462753Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0011] Task initiated on local node
[2026-05-27T17:56:11.774704Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.775396Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.778231Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0015] Task initiated on local node
[2026-05-27T17:56:11.791291Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.791950Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.794578Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0007] Task initiated on local node
[2026-05-27T17:56:11.824072Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.824791Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.827472Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0001] Task initiated on local node
[2026-05-27T17:56:11.856940Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.857691Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.860832Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0003] Task initiated on local node
[2026-05-27T17:56:11.921812Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.921906Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.922541Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.923059Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.926138Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0007] Task initiated on local node
[2026-05-27T17:56:11.927123Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0009] Task initiated on local node
[2026-05-27T17:56:11.955773Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.956475Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.959430Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0001] Task initiated on local node
[2026-05-27T17:56:11.988682Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.989383Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.992193Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0012] Task initiated on local node
[2026-05-27T17:56:12.021404Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.022074Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.025011Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0013] Task initiated on local node
[2026-05-27T17:56:12.287188Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.287843Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.290688Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0000] Task initiated on local node
[2026-05-27T17:56:12.319975Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.320630Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.323204Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0014] Task initiated on local node
[2026-05-27T17:56:12.352929Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.353605Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.356353Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0013] Task initiated on local node
[2026-05-27T17:56:12.417654Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.418312Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.421149Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0013] Task initiated on local node
[2026-05-27T17:56:12.450386Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.451041Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.453788Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0010] Task initiated on local node
[2026-05-27T17:56:12.483609Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.484221Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.486680Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0008] Task initiated on local node
[2026-05-27T17:56:12.516223Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.516822Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.519410Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0002] Task initiated on local node
[2026-05-27T17:56:12.548640Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.548709Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.549243Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.549484Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.552109Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0015] Task initiated on local node
[2026-05-27T17:56:12.552824Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0005] Task initiated on local node
[2026-05-27T17:56:12.582307Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.582392Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.582431Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.582972Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.583255Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.586073Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0011] Task initiated on local node
[2026-05-27T17:56:12.586962Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0008] Task initiated on local node
[2026-05-27T17:56:12.615380Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.829999Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.830590Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.833199Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0012] Task initiated on local node
[2026-05-27T17:56:12.862579Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.926869Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.927426Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.930070Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0009] Task initiated on local node
[2026-05-27T17:56:12.959538Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.963216Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.963651Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.966321Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0011] Task initiated on local node
[2026-05-27T17:56:12.979596Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.980106Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.982698Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0013] Task initiated on local node
[2026-05-27T17:56:12.995927Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.011751Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.276552Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.277094Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.279659Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0008] Task initiated on local node
[2026-05-27T17:56:13.309437Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.824751Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.825283Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.827462Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0003] Task initiated on local node
[2026-05-27T17:56:13.857141Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.857428Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.857555Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.857878Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.858298Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.861983Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-27T17:56:13.863195Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-27T17:56:13.864020Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-27T17:56:13.890631Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.890700Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.890723Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.890917Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.891156Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.893646Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-27T17:56:13.894297Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-27T17:56:13.923088Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.923160Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.923338Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.925675Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-27T17:56:13.955263Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:17.226486Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-27T17:56:25.498479Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-27T17:56:25.498479Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] 
[2026-05-27T17:56:25.498479Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-27T17:56:25.498522Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] 
[2026-05-27T17:56:25.498529Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-27T17:56:25.498536Z] [nf-d5e8615be6228e12022dd52e83913f0d-7ee7b-j5sdv] [573_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec