Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/0f20df2ba7cacf28a35a20039d1aae/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/0f20df2ba7cacf28a35a20039d1aae/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ed/1a1656640c36caafc45df505cb7858/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/0f20df2ba7cacf28a35a20039d1aae/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/aa/d830d20ffd1875296cbd4ecd995e87/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/aa/d830d20ffd1875296cbd4ecd995e87/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-9tzttih6 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-05-27 18:00:36,037 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-05-27 18:00:36,832 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-05-27 18:00:36,998 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-05-27 18:00:37,875 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-05-27 18:00:38,035 - cnv_pipe.batch.run_model - INFO - Processing cluster 967 with 155 probes
2026-05-27 18:00:38,407 - cnv_pipe.batch.run_model.cluster967 - INFO - Child process started for cluster 967 with 155 probes
2026-05-27 18:01:22,798 - cnv_pipe.batch.run_model.cluster967 - INFO - Child process finished cluster 967. Wrote cluster_967_samples.csv and cluster_967_params.csv
2026-05-27 18:01:22,799 - cnv_pipe.batch.run_model - INFO - Cluster 967 finished in 44.76 seconds. Status: SUCCESS