[2026-05-27T17:56:07.842759Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-27T17:56:07.843347Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-27T17:56:07.843357Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-27T17:56:07.843362Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-27T17:56:07.843366Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXKX4JSI'
[2026-05-27T17:56:07.843370Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-27T17:56:07.843375Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-27T17:56:07.843378Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-27T17:56:07.843382Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-05-27T17:56:07.843385Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-27T17:56:07.843389Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-27T17:56:07.843393Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-27T17:56:07.843397Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-27T17:56:07.843401Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-27T17:56:07.843773Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-27T17:56:07.843876Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-27T17:56:07.849493Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-27T17:56:07.850188Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-27T17:56:07.850419Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-27T17:56:07.850607Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-27T17:56:07.850826Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T17:56:07.851133Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-05-27T17:56:07.851257Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-05-27T17:56:07.851335Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-05-27T17:56:07.851463Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-05-27T17:56:07.851532Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-05-27T17:56:07.851655Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-05-27T17:56:07.851720Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-05-27T17:56:07.851836Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-05-27T17:56:07.852042Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-05-27T17:56:07.852439Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T17:56:07.852629Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-05-27T17:56:07.853057Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-05-27T17:56:07.855528Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-05-27T17:56:07.855667Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-27T17:56:07.855987Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-05-27T17:56:07.856126Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-05-27T17:56:07.856194Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-05-27T17:56:07.856308Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-05-27T17:56:07.856371Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-05-27T17:56:07.856567Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-05-27T17:56:07.856637Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-05-27T17:56:07.856755Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-05-27T17:56:07.856825Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-05-27T17:56:07.856990Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-05-27T17:56:07.857361Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-05-27T17:56:07.857497Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-05-27T17:56:07.857563Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-05-27T17:56:07.857675Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-05-27T17:56:07.857741Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-05-27T17:56:07.857852Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-05-27T17:56:07.857922Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-05-27T17:56:07.858045Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-05-27T17:56:07.858110Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-05-27T17:56:07.858221Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-05-27T17:56:07.858285Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-05-27T17:56:07.858489Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-05-27T17:56:07.858835Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-05-27T17:56:07.858950Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-05-27T17:56:07.859013Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-05-27T17:56:07.859127Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-05-27T17:56:07.859191Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-05-27T17:56:07.859300Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-05-27T17:56:07.859389Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-05-27T17:56:07.859840Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-05-27T17:56:07.859953Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-05-27T17:56:07.860416Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-05-27T17:56:07.860486Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-05-27T17:56:07.860658Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-05-27T17:56:07.860723Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-05-27T17:56:07.860831Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-05-27T17:56:07.860896Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-05-27T17:56:07.861005Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-05-27T17:56:07.861087Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-05-27T17:56:07.861233Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-05-27T17:56:07.861305Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-05-27T17:56:07.861443Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-05-27T17:56:07.861625Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-05-27T17:56:07.862129Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-05-27T17:56:07.862198Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-05-27T17:56:07.862309Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-05-27T17:56:07.862373Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-05-27T17:56:07.862484Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-05-27T17:56:07.862549Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-05-27T17:56:07.862657Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-05-27T17:56:07.862724Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-05-27T17:56:07.862833Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-05-27T17:56:07.862895Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-05-27T17:56:07.878530Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-05-27T17:56:07.879062Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-05-27T17:56:07.879140Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-27T17:56:07.879309Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T17:56:07.879379Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T17:56:07.879464Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T17:56:07.879534Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T17:56:07.881360Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-27T17:56:07.882399Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T17:56:07.882503Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-27T17:56:07.887978Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:07.888596Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-05-27T17:56:07.889184Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-05-27T17:56:07.889762Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-05-27T17:56:07.890530Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-05-27T17:56:07.892267Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-05-27T17:56:07.893245Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-05-27T17:56:07.893613Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-05-27T17:56:07.894452Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-05-27T17:56:07.895385Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-05-27T17:56:07.898262Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-05-27T17:56:07.902516Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0000] Task initiated on local node
[2026-05-27T17:56:07.903362Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0017] Task initiated on local node
[2026-05-27T17:56:07.907297Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0014] Task initiated on local node
[2026-05-27T17:56:07.907900Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0011] Task initiated on local node
[2026-05-27T17:56:07.910515Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-05-27T17:56:07.911399Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0016] Task initiated on local node
[2026-05-27T17:56:07.963695Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:07.964485Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-05-27T17:56:07.967528Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0009] Task initiated on local node
[2026-05-27T17:56:07.968275Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:07.968991Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-05-27T17:56:07.972613Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0003] Task initiated on local node
[2026-05-27T17:56:08.534844Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.535720Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.538929Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0019] Task initiated on local node
[2026-05-27T17:56:08.800825Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.801743Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.804682Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0011] Task initiated on local node
[2026-05-27T17:56:08.833652Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.834503Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.837160Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-05-27T17:56:08.948608Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.949408Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.952238Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-05-27T17:56:09.013746Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:09.014551Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-05-27T17:56:09.017271Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0006] Task initiated on local node
[2026-05-27T17:56:09.780639Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:09.781515Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-05-27T17:56:09.784554Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-05-27T17:56:09.896226Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:09.897062Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-05-27T17:56:09.899771Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_000_chr1_0000] Task initiated on local node
[2026-05-27T17:56:09.900606Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:09.901243Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-05-27T17:56:09.903733Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0015] Task initiated on local node
[2026-05-27T17:56:09.965266Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:09.965348Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:09.966061Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-05-27T17:56:09.966366Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-05-27T17:56:09.969236Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0006] Task initiated on local node
[2026-05-27T17:56:09.970112Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0016] Task initiated on local node
[2026-05-27T17:56:09.999190Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:09.999267Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:09.999294Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:09.999946Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.000233Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.000423Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.003648Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0017] Task initiated on local node
[2026-05-27T17:56:10.004917Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0009] Task initiated on local node
[2026-05-27T17:56:10.006190Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-05-27T17:56:10.034031Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.034095Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.034741Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.035175Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.037665Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-05-27T17:56:10.038565Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-05-27T17:56:10.067696Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.067794Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.068723Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.069168Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.069605Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.072373Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.072583Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-05-27T17:56:10.072782Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-05-27T17:56:10.075103Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0018] Task initiated on local node
[2026-05-27T17:56:10.104812Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.104901Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.105526Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.105943Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.108601Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0000] Task initiated on local node
[2026-05-27T17:56:10.109460Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0013] Task initiated on local node
[2026-05-27T17:56:10.170155Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.170747Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.173576Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-05-27T17:56:10.234940Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.235611Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.238283Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-05-27T17:56:10.349864Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.350573Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.353263Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0004] Task initiated on local node
[2026-05-27T17:56:10.414886Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.415544Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.418307Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0003] Task initiated on local node
[2026-05-27T17:56:10.447596Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.448203Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.451081Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-05-27T17:56:10.512187Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.512875Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.515451Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-05-27T17:56:10.576996Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.577702Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.580410Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0012] Task initiated on local node
[2026-05-27T17:56:10.642009Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.642647Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.645552Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-05-27T17:56:10.674877Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.675547Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.678407Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0007] Task initiated on local node
[2026-05-27T17:56:11.391450Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.391536Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.392123Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.392402Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.395532Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0014] Task initiated on local node
[2026-05-27T17:56:11.396223Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0001] Task initiated on local node
[2026-05-27T17:56:11.424813Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.425429Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.428043Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-05-27T17:56:11.740326Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.740424Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.741005Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.741364Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.744183Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-05-27T17:56:11.745360Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0005] Task initiated on local node
[2026-05-27T17:56:11.805913Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.806528Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.809206Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0019] Task initiated on local node
[2026-05-27T17:56:11.838564Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.839165Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.842032Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-05-27T17:56:11.903320Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.903923Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.906812Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-05-27T17:56:11.935875Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.936452Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.939393Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0010] Task initiated on local node
[2026-05-27T17:56:11.968402Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.969002Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.971639Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0004] Task initiated on local node
[2026-05-27T17:56:12.000911Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.001588Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.004290Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0008] Task initiated on local node
[2026-05-27T17:56:12.216443Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.217114Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.220565Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0012] Task initiated on local node
[2026-05-27T17:56:12.281596Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.281703Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.282236Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.282513Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.285786Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0013] Task initiated on local node
[2026-05-27T17:56:12.286162Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0020] Task initiated on local node
[2026-05-27T17:56:12.315728Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.316278Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.319135Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0002] Task initiated on local node
[2026-05-27T17:56:12.380704Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.381337Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.383831Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-05-27T17:56:12.445457Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.446006Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.448964Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0015] Task initiated on local node
[2026-05-27T17:56:12.478389Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.478918Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.481557Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0018] Task initiated on local node
[2026-05-27T17:56:12.543020Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.543101Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.543600Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.544235Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.547072Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0007] Task initiated on local node
[2026-05-27T17:56:12.548071Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-05-27T17:56:12.577793Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.578326Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.580938Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0010] Task initiated on local node
[2026-05-27T17:56:12.610253Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.610373Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.610819Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.613382Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-05-27T17:56:12.642675Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.857151Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.857582Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.860372Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0008] Task initiated on local node
[2026-05-27T17:56:12.889779Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.104378Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.104836Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.107822Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-05-27T17:56:13.136820Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.351189Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.351599Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.354042Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0005] Task initiated on local node
[2026-05-27T17:56:13.383369Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.597709Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.598080Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.600487Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0001] Task initiated on local node
[2026-05-27T17:56:13.629994Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.844323Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.844699Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.846941Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0020] Task initiated on local node
[2026-05-27T17:56:13.876491Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:14.241081Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:14.241470Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-05-27T17:56:14.243728Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0002] Task initiated on local node
[2026-05-27T17:56:14.273232Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:14.273461Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:14.273578Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T17:56:14.273955Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T17:56:14.274502Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-27T17:56:14.277254Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-27T17:56:14.278495Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-27T17:56:14.279252Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-27T17:56:14.306680Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:14.306733Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:14.306754Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:14.306925Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T17:56:14.307536Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T17:56:14.309695Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-27T17:56:14.310495Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-27T17:56:14.340252Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:14.340310Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:14.340480Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T17:56:14.342711Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-27T17:56:14.372368Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:18.445680Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-27T17:56:26.731489Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-27T17:56:26.731489Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] 
[2026-05-27T17:56:26.731489Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-27T17:56:26.731536Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] 
[2026-05-27T17:56:26.731543Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-27T17:56:26.731549Z] [nf-19545d4dd05923729fa2f97af8f502d0-311f2-nbtrb] [574_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec