Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/54/188295b52870c65a70f8a2d69a0d91/HCC1395_tumor.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/59/ec7efdb262ed187caf3580ae9f9654/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/54/188295b52870c65a70f8a2d69a0d91/HCC1395_tumor.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr12_102480219-102480663.bed.gz
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/59/ec7efdb262ed187caf3580ae9f9654/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr12_102480219-102480663.bed.gz.tbi
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-05-27T17:56:00.854888Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-27T17:56:00.858768Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-27T17:56:00.858785Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-27T17:56:00.858790Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-27T17:56:00.858794Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXvIN7k5'
[2026-05-27T17:56:00.858798Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-27T17:56:00.858802Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-27T17:56:00.858806Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-27T17:56:00.858810Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-05-27T17:56:00.858814Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-27T17:56:00.858817Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-27T17:56:00.858821Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-27T17:56:00.858824Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-27T17:56:00.858828Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-27T17:56:00.859675Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-27T17:56:00.859826Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-27T17:56:00.865602Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-27T17:56:00.866419Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-27T17:56:00.866618Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-27T17:56:00.866894Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-27T17:56:00.867239Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.867981Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.868072Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.868167Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.868379Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.868519Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.868917Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T17:56:00.869082Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.869187Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.869982Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.870414Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.871918Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.872130Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-27T17:56:00.872237Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.872394Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.872560Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.872769Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.872998Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.873307Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.873375Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.873558Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.873623Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.873732Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.873797Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.873912Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.873973Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.874092Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.874160Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.874276Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0000' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.874422Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0000' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.874778Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0001' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.874855Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0001' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.874964Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0002' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.875025Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0002' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.875134Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0003' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.875197Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0003' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.875305Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0004' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.875394Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0004' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.875577Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0005' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.875646Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0005' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.875821Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0006' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.876208Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0006' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.876327Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0007' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.876394Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0007' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.876511Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0008' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.876573Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0008' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.876687Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0009' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.876799Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0009' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.876912Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_013_chr14_0000' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.876979Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_013_chr14_0000' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.877088Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_013_chr14_0001' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.877153Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_013_chr14_0001' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.877398Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_013_chr14_0002' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.877760Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_013_chr14_0002' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.877869Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_013_chr14_0003' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.877932Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_013_chr14_0003' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.878048Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_013_chr14_0004' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.878109Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_013_chr14_0004' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.878216Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_013_chr14_0005' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.878281Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_013_chr14_0005' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.878390Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_013_chr14_0006' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.878450Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_013_chr14_0006' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.878563Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_013_chr14_0007' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.878627Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_013_chr14_0007' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.878737Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_013_chr14_0008' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.878927Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_013_chr14_0008' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.879453Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_014_chr15_0000' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.879514Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_014_chr15_0000' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.879622Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_014_chr15_0001' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.879687Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_014_chr15_0001' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.879793Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_014_chr15_0002' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.879886Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_014_chr15_0002' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.880008Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_014_chr15_0003' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.880075Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_014_chr15_0003' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.881524Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_014_chr15_0004' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.882176Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_014_chr15_0004' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.882302Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_014_chr15_0005' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.882370Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_014_chr15_0005' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.882481Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_014_chr15_0006' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.882547Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_014_chr15_0006' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.882660Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_014_chr15_0007' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.882722Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_014_chr15_0007' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.882835Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_014_chr15_0008' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.882902Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_014_chr15_0008' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.883009Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.883082Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.883377Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.884019Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.884150Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.884219Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.884336Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.884406Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.884515Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.884579Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.884690Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.884751Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.884863Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.884926Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.900147Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.900802Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:00.900944Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.901851Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.902057Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' from sub-workflow 'CallGenome'
[2026-05-27T17:56:00.902294Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.902409Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.902631Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0003' from sub-workflow 'CallGenome'
[2026-05-27T17:56:00.902855Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.903115Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.903516Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0002' from sub-workflow 'CallGenome'
[2026-05-27T17:56:00.904017Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.904664Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' from sub-workflow 'CallGenome'
[2026-05-27T17:56:00.904818Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T17:56:00.905686Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' from sub-workflow 'CallGenome'
[2026-05-27T17:56:00.906043Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-27T17:56:00.907144Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-05-27T17:56:00.908488Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' from sub-workflow 'CallGenome'
[2026-05-27T17:56:00.910911Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-05-27T17:56:00.911250Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0004] Task initiated on local node
[2026-05-27T17:56:00.915126Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_013_chr14_0003] Task initiated on local node
[2026-05-27T17:56:00.918193Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0002] Task initiated on local node
[2026-05-27T17:56:00.920806Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0001] Task initiated on local node
[2026-05-27T17:56:00.923411Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0002] Task initiated on local node
[2026-05-27T17:56:00.927143Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0006] Task initiated on local node
[2026-05-27T17:56:00.929783Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0011] Task initiated on local node
[2026-05-27T17:56:00.992408Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:00.992951Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0006] Task initiated on local node
[2026-05-27T17:56:00.994100Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-05-27T17:56:00.994526Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:00.994595Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:00.997180Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-05-27T17:56:00.997532Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0008] Task initiated on local node
[2026-05-27T17:56:00.997850Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0000' from sub-workflow 'CallGenome'
[2026-05-27T17:56:01.001403Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0009] Task initiated on local node
[2026-05-27T17:56:01.003162Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_014_chr15_0000] Task initiated on local node
[2026-05-27T17:56:01.062298Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:01.063605Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0009' from sub-workflow 'CallGenome'
[2026-05-27T17:56:01.064090Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:01.066533Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0004' from sub-workflow 'CallGenome'
[2026-05-27T17:56:01.067008Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0009] Task initiated on local node
[2026-05-27T17:56:01.069293Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_013_chr14_0004] Task initiated on local node
[2026-05-27T17:56:01.431449Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:01.432448Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' from sub-workflow 'CallGenome'
[2026-05-27T17:56:01.435143Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0002] Task initiated on local node
[2026-05-27T17:56:01.464595Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:01.465503Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0005' from sub-workflow 'CallGenome'
[2026-05-27T17:56:01.468377Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_014_chr15_0005] Task initiated on local node
[2026-05-27T17:56:01.579783Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:01.580843Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0004' from sub-workflow 'CallGenome'
[2026-05-27T17:56:01.583564Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0004] Task initiated on local node
[2026-05-27T17:56:02.096493Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:02.097478Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0004' from sub-workflow 'CallGenome'
[2026-05-27T17:56:02.100404Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_014_chr15_0004] Task initiated on local node
[2026-05-27T17:56:02.212079Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:02.213072Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0002' from sub-workflow 'CallGenome'
[2026-05-27T17:56:02.215651Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0002] Task initiated on local node
[2026-05-27T17:56:02.245257Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:02.245356Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:02.246224Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-05-27T17:56:02.246617Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' from sub-workflow 'CallGenome'
[2026-05-27T17:56:02.249803Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0004] Task initiated on local node
[2026-05-27T17:56:02.250515Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0003] Task initiated on local node
[2026-05-27T17:56:02.278907Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:02.278996Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:02.279819Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0006' from sub-workflow 'CallGenome'
[2026-05-27T17:56:02.280170Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-05-27T17:56:02.283336Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0006] Task initiated on local node
[2026-05-27T17:56:02.284266Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0005] Task initiated on local node
[2026-05-27T17:56:02.313459Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:02.313523Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:02.314298Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-05-27T17:56:02.314547Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0001' from sub-workflow 'CallGenome'
[2026-05-27T17:56:02.317133Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0001] Task initiated on local node
[2026-05-27T17:56:02.318148Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0009] Task initiated on local node
[2026-05-27T17:56:02.346357Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:02.346439Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:02.346462Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:02.347246Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0003' from sub-workflow 'CallGenome'
[2026-05-27T17:56:02.347662Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' from sub-workflow 'CallGenome'
[2026-05-27T17:56:02.349233Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0002' from sub-workflow 'CallGenome'
[2026-05-27T17:56:02.350193Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_013_chr14_0003] Task initiated on local node
[2026-05-27T17:56:02.352689Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0003] Task initiated on local node
[2026-05-27T17:56:02.354146Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_014_chr15_0002] Task initiated on local node
[2026-05-27T17:56:02.381863Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:02.382700Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0007' from sub-workflow 'CallGenome'
[2026-05-27T17:56:02.385128Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_014_chr15_0007] Task initiated on local node
[2026-05-27T17:56:02.414633Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:02.415507Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0001' from sub-workflow 'CallGenome'
[2026-05-27T17:56:02.418232Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_013_chr14_0001] Task initiated on local node
[2026-05-27T17:56:02.630204Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:02.631081Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0004' from sub-workflow 'CallGenome'
[2026-05-27T17:56:02.633738Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0004] Task initiated on local node
[2026-05-27T17:56:02.663078Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:02.663888Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-05-27T17:56:02.666744Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0010] Task initiated on local node
[2026-05-27T17:56:02.878661Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:02.879601Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-05-27T17:56:02.882433Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0003] Task initiated on local node
[2026-05-27T17:56:02.911769Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:02.912658Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0006' from sub-workflow 'CallGenome'
[2026-05-27T17:56:02.915167Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_013_chr14_0006] Task initiated on local node
[2026-05-27T17:56:03.026812Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:03.027777Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0006' from sub-workflow 'CallGenome'
[2026-05-27T17:56:03.030346Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0006] Task initiated on local node
[2026-05-27T17:56:03.060077Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:03.061019Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' from sub-workflow 'CallGenome'
[2026-05-27T17:56:03.063736Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0007] Task initiated on local node
[2026-05-27T17:56:03.125246Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:03.126152Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-05-27T17:56:03.128953Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0000] Task initiated on local node
[2026-05-27T17:56:03.190539Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:03.190625Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:03.191458Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-05-27T17:56:03.191769Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-05-27T17:56:03.194715Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_011_chr12_0000] Task initiated on local node
[2026-05-27T17:56:03.195665Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0007] Task initiated on local node
[2026-05-27T17:56:03.256482Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:03.256564Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:03.256587Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:03.257375Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-05-27T17:56:03.257659Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0005' from sub-workflow 'CallGenome'
[2026-05-27T17:56:03.257886Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-05-27T17:56:03.261291Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_014_chr15_0005] Task initiated on local node
[2026-05-27T17:56:03.262688Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0007] Task initiated on local node
[2026-05-27T17:56:03.263550Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0004] Task initiated on local node
[2026-05-27T17:56:03.291290Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:03.291383Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:03.292182Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' from sub-workflow 'CallGenome'
[2026-05-27T17:56:03.292502Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0000' from sub-workflow 'CallGenome'
[2026-05-27T17:56:03.295277Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_014_chr15_0000] Task initiated on local node
[2026-05-27T17:56:03.296187Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0005] Task initiated on local node
[2026-05-27T17:56:03.324367Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:03.324432Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:03.325174Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-05-27T17:56:03.325473Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0008' from sub-workflow 'CallGenome'
[2026-05-27T17:56:03.328372Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0004] Task initiated on local node
[2026-05-27T17:56:03.329250Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_013_chr14_0008] Task initiated on local node
[2026-05-27T17:56:03.357765Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:03.357856Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:03.358655Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-05-27T17:56:03.358892Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-05-27T17:56:03.361826Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0005] Task initiated on local node
[2026-05-27T17:56:03.362727Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0000] Task initiated on local node
[2026-05-27T17:56:03.390880Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:03.391722Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-05-27T17:56:03.394286Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0011] Task initiated on local node
[2026-05-27T17:56:03.407639Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:03.408471Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0002' from sub-workflow 'CallGenome'
[2026-05-27T17:56:03.410939Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_014_chr15_0002] Task initiated on local node
[2026-05-27T17:56:03.424366Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:03.425160Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' from sub-workflow 'CallGenome'
[2026-05-27T17:56:03.427591Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0001] Task initiated on local node
[2026-05-27T17:56:03.441028Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:03.441817Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0009' from sub-workflow 'CallGenome'
[2026-05-27T17:56:03.444297Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0009] Task initiated on local node
[2026-05-27T17:56:03.457866Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:03.458650Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' from sub-workflow 'CallGenome'
[2026-05-27T17:56:03.461356Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0006] Task initiated on local node
[2026-05-27T17:56:03.474704Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:03.475504Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0004' from sub-workflow 'CallGenome'
[2026-05-27T17:56:03.478056Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_013_chr14_0004] Task initiated on local node
[2026-05-27T17:56:03.491381Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:03.492202Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0000' from sub-workflow 'CallGenome'
[2026-05-27T17:56:03.495028Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_013_chr14_0000] Task initiated on local node
[2026-05-27T17:56:03.508127Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:03.508923Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0007' from sub-workflow 'CallGenome'
[2026-05-27T17:56:03.511924Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0007] Task initiated on local node
[2026-05-27T17:56:03.573056Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:03.573160Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:03.573851Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0000' from sub-workflow 'CallGenome'
[2026-05-27T17:56:03.574156Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0004' from sub-workflow 'CallGenome'
[2026-05-27T17:56:03.577367Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_013_chr14_0000] Task initiated on local node
[2026-05-27T17:56:03.578592Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_014_chr15_0004] Task initiated on local node
[2026-05-27T17:56:03.608071Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:03.608208Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:03.608955Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0000' from sub-workflow 'CallGenome'
[2026-05-27T17:56:03.609264Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0003' from sub-workflow 'CallGenome'
[2026-05-27T17:56:03.613088Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0000] Task initiated on local node
[2026-05-27T17:56:03.613413Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_014_chr15_0003] Task initiated on local node
[2026-05-27T17:56:03.625759Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:03.626521Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0001' from sub-workflow 'CallGenome'
[2026-05-27T17:56:03.629385Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_014_chr15_0001] Task initiated on local node
[2026-05-27T17:56:03.690765Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:03.691545Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-05-27T17:56:03.694584Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0000] Task initiated on local node
[2026-05-27T17:56:03.755944Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:03.756812Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0005' from sub-workflow 'CallGenome'
[2026-05-27T17:56:03.760098Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_013_chr14_0005] Task initiated on local node
[2026-05-27T17:56:03.821335Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:03.822111Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0006' from sub-workflow 'CallGenome'
[2026-05-27T17:56:03.824807Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_014_chr15_0006] Task initiated on local node
[2026-05-27T17:56:03.886324Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:03.887164Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0007' from sub-workflow 'CallGenome'
[2026-05-27T17:56:03.890174Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0007] Task initiated on local node
[2026-05-27T17:56:03.919224Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:03.920034Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0005' from sub-workflow 'CallGenome'
[2026-05-27T17:56:03.923069Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0005] Task initiated on local node
[2026-05-27T17:56:04.235067Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:04.235800Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-05-27T17:56:04.238438Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0008] Task initiated on local node
[2026-05-27T17:56:04.267807Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:04.268582Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-05-27T17:56:04.271204Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0006] Task initiated on local node
[2026-05-27T17:56:04.300601Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:04.301297Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0002' from sub-workflow 'CallGenome'
[2026-05-27T17:56:04.304565Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_013_chr14_0002] Task initiated on local node
[2026-05-27T17:56:04.516261Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:04.517031Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-05-27T17:56:04.520213Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0010] Task initiated on local node
[2026-05-27T17:56:04.581439Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:04.581540Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:04.582208Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0001' from sub-workflow 'CallGenome'
[2026-05-27T17:56:04.582609Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' from sub-workflow 'CallGenome'
[2026-05-27T17:56:04.585597Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0001] Task initiated on local node
[2026-05-27T17:56:04.586923Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0007] Task initiated on local node
[2026-05-27T17:56:04.647273Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:04.647373Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:04.648015Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0005' from sub-workflow 'CallGenome'
[2026-05-27T17:56:04.648501Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0007' from sub-workflow 'CallGenome'
[2026-05-27T17:56:04.651484Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0005] Task initiated on local node
[2026-05-27T17:56:04.651954Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_014_chr15_0007] Task initiated on local node
[2026-05-27T17:56:04.680763Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:04.681483Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0003' from sub-workflow 'CallGenome'
[2026-05-27T17:56:04.684199Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0003] Task initiated on local node
[2026-05-27T17:56:04.697422Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:04.698079Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0001' from sub-workflow 'CallGenome'
[2026-05-27T17:56:04.700773Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_014_chr15_0001] Task initiated on local node
[2026-05-27T17:56:04.730230Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:04.730912Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-05-27T17:56:04.734283Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0001] Task initiated on local node
[2026-05-27T17:56:04.795322Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:04.796001Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' from sub-workflow 'CallGenome'
[2026-05-27T17:56:04.798710Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0005] Task initiated on local node
[2026-05-27T17:56:04.860401Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:04.861088Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0008' from sub-workflow 'CallGenome'
[2026-05-27T17:56:04.864040Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0008] Task initiated on local node
[2026-05-27T17:56:05.125875Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:05.126584Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0008' from sub-workflow 'CallGenome'
[2026-05-27T17:56:05.129548Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_013_chr14_0008] Task initiated on local node
[2026-05-27T17:56:05.191076Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:05.191788Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0001' from sub-workflow 'CallGenome'
[2026-05-27T17:56:05.195060Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_013_chr14_0001] Task initiated on local node
[2026-05-27T17:56:05.224145Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:05.224832Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-05-27T17:56:05.227593Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0002] Task initiated on local node
[2026-05-27T17:56:05.288955Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:05.289637Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-05-27T17:56:05.292458Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0002] Task initiated on local node
[2026-05-27T17:56:05.321969Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:05.322076Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:05.322635Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0002' from sub-workflow 'CallGenome'
[2026-05-27T17:56:05.322886Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0000' from sub-workflow 'CallGenome'
[2026-05-27T17:56:05.325572Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_013_chr14_0002] Task initiated on local node
[2026-05-27T17:56:05.326455Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0000] Task initiated on local node
[2026-05-27T17:56:05.387083Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:05.387191Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:05.387776Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0008' from sub-workflow 'CallGenome'
[2026-05-27T17:56:05.388053Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0006' from sub-workflow 'CallGenome'
[2026-05-27T17:56:05.391067Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_013_chr14_0006] Task initiated on local node
[2026-05-27T17:56:05.392347Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_014_chr15_0008] Task initiated on local node
[2026-05-27T17:56:05.420355Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:05.421010Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0007' from sub-workflow 'CallGenome'
[2026-05-27T17:56:05.423755Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_013_chr14_0007] Task initiated on local node
[2026-05-27T17:56:05.453163Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:05.453783Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-05-27T17:56:05.456809Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0000] Task initiated on local node
[2026-05-27T17:56:05.518083Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:05.518719Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-05-27T17:56:05.521094Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0001] Task initiated on local node
[2026-05-27T17:56:05.550728Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:05.551315Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' from sub-workflow 'CallGenome'
[2026-05-27T17:56:05.554182Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0003] Task initiated on local node
[2026-05-27T17:56:05.583542Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:05.583982Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:05.584596Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0005' from sub-workflow 'CallGenome'
[2026-05-27T17:56:05.587244Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_013_chr14_0005] Task initiated on local node
[2026-05-27T17:56:05.602393Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:05.602901Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0003' from sub-workflow 'CallGenome'
[2026-05-27T17:56:05.606168Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_014_chr15_0003] Task initiated on local node
[2026-05-27T17:56:05.635024Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:05.635112Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:05.849749Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:05.850357Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0006' from sub-workflow 'CallGenome'
[2026-05-27T17:56:05.852877Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_014_chr15_0006] Task initiated on local node
[2026-05-27T17:56:05.882242Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.147210Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.147764Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0008' from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.150688Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0008] Task initiated on local node
[2026-05-27T17:56:06.212144Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.212244Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.212747Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0003' from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.215752Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0003] Task initiated on local node
[2026-05-27T17:56:06.244918Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.409407Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.409976Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0008' from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.412692Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_014_chr15_0008] Task initiated on local node
[2026-05-27T17:56:06.474124Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.638568Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.639063Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0007' from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.641845Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_013_chr14_0007] Task initiated on local node
[2026-05-27T17:56:06.703322Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.703629Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.703780Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.704050Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.704615Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.709552Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-27T17:56:06.709900Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-27T17:56:06.710486Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-27T17:56:06.736753Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.736818Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.736842Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.737048Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.737339Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.740033Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-27T17:56:06.764071Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-27T17:56:06.769977Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.770050Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.770243Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.772564Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-27T17:56:06.834677Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:11.461756Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-27T17:56:19.747640Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-27T17:56:19.747640Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] 
[2026-05-27T17:56:19.747640Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-27T17:56:19.747705Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] 
[2026-05-27T17:56:19.747714Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-27T17:56:19.747721Z] [nf-59ec7efdb262ed187caf3580ae9f9654-d4ed5-l2tk6] [563_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec