Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/0f20df2ba7cacf28a35a20039d1aae/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/0f20df2ba7cacf28a35a20039d1aae/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ed/1a1656640c36caafc45df505cb7858/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/0f20df2ba7cacf28a35a20039d1aae/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c8/6b9e0293d388fb9e2cef34df88e0b0/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c8/6b9e0293d388fb9e2cef34df88e0b0/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-oxlzr528 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-05-27 18:00:26,103 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-05-27 18:00:26,879 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-05-27 18:00:27,046 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-05-27 18:00:27,935 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-05-27 18:00:28,104 - cnv_pipe.batch.run_model - INFO - Processing cluster 909 with 166 probes
2026-05-27 18:00:28,467 - cnv_pipe.batch.run_model.cluster909 - INFO - Child process started for cluster 909 with 166 probes
2026-05-27 18:01:15,707 - cnv_pipe.batch.run_model.cluster909 - INFO - Child process finished cluster 909. Wrote cluster_909_samples.csv and cluster_909_params.csv
2026-05-27 18:01:15,708 - cnv_pipe.batch.run_model - INFO - Cluster 909 finished in 47.60 seconds. Status: SUCCESS