cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta -t 12 --interval chr1_69091-70008.bed.gz -i Sig_18_Blood.recalibrated.bam --algo Haplotyper -d dbsnp_146.hg38.vcf.gz --emit_mode variant germline_control_2.haplotyper.chr1_69091-70008.bed.unfiltered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:18630847, elapsed 0.0s, est remaining 0.8s, peak mem 87MB, user 0.0s, sys 0.1s, output queue size 2375
progress 10% @chr1:37799567, elapsed 0.1s, est remaining 0.7s, peak mem 96MB, user 0.1s, sys 0.3s, output queue size 1701
progress 15% @chr1:65405870, elapsed 0.1s, est remaining 0.8s, peak mem 105MB, user 0.1s, sys 0.4s, output queue size 4423
progress 20% @chr1:113854471, elapsed 0.2s, est remaining 0.8s, peak mem 121MB, user 0.2s, sys 0.6s, output queue size 7185
progress 25% @chr1:155248405, elapsed 0.3s, est remaining 0.8s, peak mem 129MB, user 0.2s, sys 0.7s, output queue size 9527
progress 30% @chr1:179102287, elapsed 0.4s, est remaining 0.8s, peak mem 138MB, user 0.3s, sys 0.8s, output queue size 11999
progress 35% @chr1:209789667, elapsed 0.4s, est remaining 0.7s, peak mem 147MB, user 0.3s, sys 0.9s, output queue size 14432
progress 40% @chr1:246931308, elapsed 0.4s, est remaining 0.6s, peak mem 157MB, user 0.3s, sys 1.1s, output queue size 16834
progress 45% @chr2:32547850, elapsed 0.5s, est remaining 0.6s, peak mem 166MB, user 0.3s, sys 1.3s, output queue size 19124
progress 50% @chr2:74460221, elapsed 0.5s, est remaining 0.5s, peak mem 175MB, user 0.4s, sys 1.4s, output queue size 21611
progress 55% @chr2:113499257, elapsed 0.5s, est remaining 0.4s, peak mem 189MB, user 0.4s, sys 1.6s, output queue size 24143
progress 60% @chr2:171006474, elapsed 0.6s, est remaining 0.4s, peak mem 201MB, user 0.5s, sys 1.8s, output queue size 26844
progress 65% @chr2:202757213, elapsed 0.6s, est remaining 0.3s, peak mem 210MB, user 0.5s, sys 1.9s, output queue size 29109
progress 70% @chr2:233772261, elapsed 0.7s, est remaining 0.3s, peak mem 220MB, user 0.5s, sys 2.0s, output queue size 31590
progress 75% @chr3:25619862, elapsed 0.7s, est remaining 0.2s, peak mem 231MB, user 0.6s, sys 2.2s, output queue size 33811
progress 80% @chr3:49805308, elapsed 0.7s, est remaining 0.2s, peak mem 240MB, user 0.6s, sys 2.4s, output queue size 36285
progress 85% @chr3:101857073, elapsed 0.8s, est remaining 0.1s, peak mem 250MB, user 0.7s, sys 2.5s, output queue size 38927
progress 90% @chr3:139538781, elapsed 0.8s, est remaining 0.1s, peak mem 259MB, user 0.7s, sys 2.6s, output queue size 41521
progress 95% @chr3:187741772, elapsed 0.9s, est remaining 0.0s, peak mem 271MB, user 0.8s, sys 2.8s, output queue size 43927
progress 100% @chr4:3443341, elapsed 0.9s, est remaining 0.0s, peak mem 282MB, user 0.8s, sys 2.9s, output queue size 46163
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 12 max 192
algo: Haplotyper
license: sentieon:Haplotyper=12
input file size: 74318159
output file size: 22307
reads: 1001133
contig: 49651 intervals 9000373 bases
active: 100735 calls 0.000 user 0.000 sys 0.018 real
advance: 51084 calls 0.011 user 0.003 sys 0.022 real
calc: 100735 calls 0.009 user 0.019 sys 0.018 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
execute: 1 calls 0.003 user 0.000 sys 1.622 real
fetch: 100735 calls 0.004 user 0.034 sys 0.019 real
fetch_ref: 100735 calls 0.101 user 0.097 sys 0.412 real
idle: 39 calls 0.004 user 0.041 sys 21.057 real
init: 1 calls 0.040 user 0.000 sys 0.043 real
region: 100735 calls 0.015 user 0.012 sys 0.021 real
tracker: 100735 calls 0.028 user 0.000 sys 0.089 real
overall: 299077632 mem 1.262 user 4.553 sys 2.742 real
ls: cannot access '*.g.vcf.gz': No such file or directory
ls: cannot access '*.g.vcf.gz.tbi': No such file or directory