cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i Sig_18_tissue.md.bam --interval xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz Sig_18_tissue.table
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:119841386, elapsed 0.0s, est remaining 0.7s, peak mem 172MB, user 0.0s, sys 0.0s, output queue size 1832
progress 10% @chr2:17816519, elapsed 0.1s, est remaining 0.6s, peak mem 172MB, user 0.0s, sys 0.0s, output queue size 11866
progress 15% @chr2:189053895, elapsed 0.1s, est remaining 0.6s, peak mem 183MB, user 0.0s, sys 0.0s, output queue size 4469
progress 20% @chr3:97871842, elapsed 0.1s, est remaining 0.5s, peak mem 192MB, user 0.0s, sys 0.0s, output queue size 14935
progress 25% @chr4:88463532, elapsed 0.2s, est remaining 0.5s, peak mem 192MB, user 0.0s, sys 0.0s, output queue size 25201
progress 30% @chr5:147395559, elapsed 0.2s, est remaining 0.5s, peak mem 210MB, user 0.0s, sys 0.0s, output queue size 35241
progress 35% @chr6:127119291, elapsed 0.2s, est remaining 0.4s, peak mem 210MB, user 0.0s, sys 0.0s, output queue size 45206
progress 40% @chr7:128805761, elapsed 0.3s, est remaining 0.4s, peak mem 219MB, user 0.0s, sys 0.0s, output queue size 54674
progress 45% @chr9:1056216, elapsed 0.3s, est remaining 0.4s, peak mem 376MB, user 0.0s, sys 0.0s, output queue size 7276
progress 50% @chr10:32037254, elapsed 0.3s, est remaining 0.3s, peak mem 421MB, user 0.0s, sys 0.0s, output queue size 17205
progress 55% @chr11:48245104, elapsed 0.4s, est remaining 0.3s, peak mem 457MB, user 0.0s, sys 0.1s, output queue size 27674
progress 60% @chr12:22201552, elapsed 0.4s, est remaining 0.3s, peak mem 462MB, user 0.0s, sys 0.1s, output queue size 37256
progress 65% @chr13:49191209, elapsed 0.4s, est remaining 0.2s, peak mem 487MB, user 0.0s, sys 0.1s, output queue size 48275
progress 70% @chr15:42684116, elapsed 0.5s, est remaining 0.2s, peak mem 511MB, user 0.0s, sys 0.1s, output queue size 58345
progress 75% @chr16:30781718, elapsed 0.5s, est remaining 0.2s, peak mem 511MB, user 0.0s, sys 0.1s, output queue size 67881
progress 80% @chr17:42513861, elapsed 0.5s, est remaining 0.1s, peak mem 520MB, user 0.0s, sys 0.1s, output queue size 78569
progress 85% @chr19:5622530, elapsed 0.6s, est remaining 0.1s, peak mem 522MB, user 0.0s, sys 0.1s, output queue size 88972
progress 90% @chr19:55694726, elapsed 0.6s, est remaining 0.1s, peak mem 531MB, user 0.0s, sys 0.1s, output queue size 98470
progress 95% @chr22:37095551, elapsed 1.0s, est remaining 0.1s, peak mem 2536MB, user 7.1s, sys 1.6s, output queue size 3251
progress 100% @chr6_GL000251v2_alt:3936444, elapsed 1.0s, est remaining 0.0s, peak mem 2536MB, user 7.3s, sys 1.6s, output queue size 8149
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
input file size: 50046789
reads: 1001838
contig: 201779 intervals 37922265 bases
advance: 208647 calls 1.894 user 0.072 sys 2.006 real
done: 1 calls 0.196 user 0.158 sys 0.355 real
execute: 1 calls 0.015 user 0.001 sys 0.997 real
fetch_reads: 208647 calls 0.082 user 0.002 sys 0.149 real
fetch_ref: 2079 calls 0.005 user 0.007 sys 0.017 real
fetch_vcf: 2079 calls 0.770 user 0.016 sys 0.920 real
idle: 92 calls 0.003 user 0.000 sys 31.635 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
update: 2294 calls 5.392 user 1.456 sys 7.607 real
overall: 2660110336 mem 11.258 user 8.308 sys 2.364 real
ls: cannot access '*.table.post': No such file or directory
ls: cannot access '*.recalibrated.bam': No such file or directory
ls: cannot access '*.recalibrated.bam.bai': No such file or directory
ls: cannot access '*.csv': No such file or directory
ls: cannot access '*.pdf': No such file or directory